Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G213800.3 | Wheat | nucleus | 95.65 | 96.68 |
| TraesCS3D01G215900.1 | Wheat | nucleus | 95.45 | 96.39 |
| HORVU3Hr1G051850.2 | Barley | nucleus | 91.59 | 83.73 |
| Os01t0375100-01 | Rice | nucleus | 64.51 | 66.17 |
| EES00793 | Sorghum | cytosol | 60.35 | 63.87 |
| Zm00001d040846_P001 | Maize | cytosol | 56.67 | 62.61 |
| EER88793 | Sorghum | cytosol | 54.16 | 59.07 |
| TraesCS4B01G101500.1 | Wheat | cytosol | 43.23 | 49.89 |
| TraesCS2B01G099600.2 | Wheat | nucleus | 48.07 | 45.31 |
| PGSC0003DMT400057888 | Potato | cytosol | 7.45 | 38.89 |
| PGSC0003DMT400089411 | Potato | cytosol | 8.22 | 37.95 |
| Solyc01g067770.1.1 | Tomato | extracellular, vacuole | 9.77 | 37.0 |
| VIT_05s0020g02050.t01 | Wine grape | nucleus | 29.11 | 36.05 |
| Bra039476.1-P | Field mustard | cytosol | 7.06 | 35.44 |
| TraesCS6B01G194500.1 | Wheat | cytosol | 32.88 | 34.84 |
| CDX74107 | Canola | cytosol | 8.99 | 34.7 |
| CDY13919 | Canola | nucleus | 15.57 | 34.11 |
| KRH11282 | Soybean | nucleus | 31.62 | 33.78 |
| PGSC0003DMT400058792 | Potato | nucleus | 29.88 | 33.7 |
| Bra001194.1-P | Field mustard | cytosol | 6.58 | 33.66 |
| CDX74108 | Canola | cytosol | 6.58 | 33.66 |
| KRH21004 | Soybean | nucleus | 31.24 | 33.37 |
| KRH50936 | Soybean | nucleus | 30.75 | 33.19 |
| CDX88917 | Canola | nucleus | 10.44 | 32.53 |
| PGSC0003DMT400086601 | Potato | cytosol | 6.29 | 32.34 |
| Solyc01g067780.1.1 | Tomato | cytosol | 28.05 | 32.12 |
| Solyc01g098250.2.1 | Tomato | nucleus | 30.75 | 32.02 |
| CDY24701 | Canola | nucleus | 17.89 | 31.41 |
| CDX92582 | Canola | nucleus | 25.53 | 31.35 |
| PGSC0003DMT400058788 | Potato | nucleus | 14.7 | 31.08 |
| CDY08056 | Canola | nucleus | 18.57 | 30.57 |
| PGSC0003DMT400038431 | Potato | nucleus | 23.02 | 30.24 |
| CDY13918 | Canola | nucleus | 16.73 | 30.19 |
| KRH34004 | Soybean | cytosol | 9.28 | 30.19 |
| PGSC0003DMT400057904 | Potato | nucleus | 31.43 | 30.06 |
| Bra002183.1-P | Field mustard | nucleus | 16.44 | 29.93 |
| Solyc08g029220.1.1 | Tomato | nucleus | 22.82 | 29.91 |
| KRH02180 | Soybean | cytosol, nucleus, plastid | 30.17 | 29.89 |
| PGSC0003DMT400094016 | Potato | nucleus | 8.41 | 29.69 |
| VIT_14s0030g00640.t01 | Wine grape | nucleus | 33.46 | 29.6 |
| CDX70837 | Canola | mitochondrion | 14.41 | 29.56 |
| CDX70843 | Canola | extracellular, golgi | 15.38 | 29.39 |
| Bra006479.1-P | Field mustard | cytosol | 15.57 | 29.17 |
| Bra006478.1-P | Field mustard | nucleus | 14.99 | 29.14 |
| CDX88918 | Canola | cytosol | 14.89 | 28.95 |
| KRG92798 | Soybean | cytosol | 19.73 | 28.77 |
| Bra020757.1-P | Field mustard | nucleus | 18.09 | 28.64 |
| KRH34003 | Soybean | cytosol | 8.03 | 28.52 |
| CDX86172 | Canola | nucleus | 17.31 | 28.46 |
| Bra009972.1-P | Field mustard | nucleus | 17.31 | 28.46 |
| CDY19714 | Canola | nucleus | 26.4 | 28.38 |
| KRG96896 | Soybean | cytosol | 29.01 | 28.36 |
| TraesCS2B01G366100.1 | Wheat | cytosol | 25.15 | 28.29 |
| TraesCS1B01G054900.1 | Wheat | nucleus | 32.59 | 28.27 |
| CDY05255 | Canola | nucleus | 18.09 | 28.25 |
| KRH68628 | Soybean | cytosol | 29.01 | 28.12 |
| Solyc10g007630.1.1 | Tomato | cytosol | 13.15 | 27.98 |
| CDX80667 | Canola | nucleus | 17.99 | 27.97 |
| TraesCS2B01G095100.1 | Wheat | cytosol | 23.31 | 27.89 |
| Solyc01g098340.2.1 | Tomato | cytosol | 21.57 | 27.88 |
| CDX99992 | Canola | cytosol | 25.34 | 27.84 |
| PGSC0003DMT400054841 | Potato | cytosol | 13.25 | 27.73 |
| PGSC0003DMT400057894 | Potato | cytosol | 10.35 | 27.58 |
| PGSC0003DMT400057893 | Potato | cytosol | 12.86 | 27.48 |
| CDY27809 | Canola | nucleus | 26.31 | 27.42 |
| Solyc01g098310.1.1 | Tomato | cytosol | 11.8 | 26.75 |
| PGSC0003DMT400057887 | Potato | cytosol | 21.47 | 26.37 |
| CDX70840 | Canola | nucleus | 14.8 | 26.2 |
| Bra006476.1-P | Field mustard | nucleus | 14.89 | 26.19 |
| CDX88920 | Canola | nucleus | 14.89 | 26.19 |
| TraesCS3B01G607500.1 | Wheat | cytosol | 18.38 | 25.61 |
| Bra006473.1-P | Field mustard | plastid | 17.12 | 25.18 |
| TraesCS3B01G475500.1 | Wheat | cytosol | 18.28 | 25.1 |
| CDX88924 | Canola | plastid | 17.12 | 25.04 |
| AT4G19590.2 | Thale cress | nucleus | 8.8 | 24.33 |
| AT5G37760.1 | Thale cress | cytosol | 4.84 | 24.15 |
| TraesCS2B01G301100.1 | Wheat | cytosol | 16.44 | 24.08 |
| CDX92586 | Canola | nucleus | 8.03 | 23.71 |
| TraesCS3B01G470100.1 | Wheat | nucleus | 16.54 | 23.55 |
| CDY41919 | Canola | nucleus, plastid | 27.08 | 23.51 |
| TraesCS4B01G319100.1 | Wheat | cytosol | 15.38 | 22.33 |
| Bra024236.1-P | Field mustard | nucleus | 7.93 | 22.28 |
| Solyc01g098330.1.1 | Tomato | nucleus | 8.8 | 22.2 |
| CDX92856 | Canola | nucleus | 9.96 | 21.91 |
| CDY27796 | Canola | cytosol | 11.12 | 21.74 |
| CDY41935 | Canola | cytosol | 11.12 | 21.62 |
| Bra039461.1-P | Field mustard | cytosol | 11.12 | 21.58 |
| TraesCS5B01G508500.1 | Wheat | cytosol | 5.61 | 21.09 |
| Bra039477.1-P | Field mustard | plastid | 10.83 | 20.82 |
| CDY29872 | Canola | cytosol | 8.8 | 20.4 |
| CDY27811 | Canola | nucleus | 8.12 | 17.54 |
| CDX70844 | Canola | mitochondrion, plasma membrane | 11.99 | 14.52 |
| Bra002182.1-P | Field mustard | nucleus | 15.09 | 14.38 |
| CDY13917 | Canola | endoplasmic reticulum, extracellular, mitochondrion | 5.71 | 14.15 |
| Bra039474.1-P | Field mustard | nucleus | 20.31 | 13.76 |
| Bra006477.1-P | Field mustard | cytosol | 17.89 | 13.45 |
| CDX70841 | Canola | nucleus | 17.21 | 12.3 |
| CDX88919 | Canola | cytosol | 17.12 | 11.2 |
| CDY41917 | Canola | nucleus | 9.77 | 10.56 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G244000.4 | EnsemblPlantsGene:TraesCS3B01G244000 | Gene3D:1.10.287.110 | InterPro:DUF3444 | InterPro:DnaJ_domain | InterPro:DnaJ_domain_CS |
| InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | PANTHER:PTHR10825 | PANTHER:PTHR10825:SF38 | PFAM:PF00226 |
| PFAM:PF11926 | PFscan:PS50076 | PRINTS:PR00625 | ScanProsite:PS00636 | SEG:seg | SMART:SM00271 |
| SUPFAM:SSF46565 | TIGR:cd06257 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3B:-:385463727..385466831
Molecular Weight (calculated)
114360.0 Da
IEP (calculated)
8.539
GRAVY (calculated)
-0.626
Length
1034 amino acids
Sequence
(BLAST)
(BLAST)
0001: MESNREEAVK AREIALKKLE SKDFVGAKRI ALKAQRIFPE LENLSQLLTV CEVHCAAEAK INELLDFYGI LQVDVTADEA TIKKQYRKLA FSLHPDKNSY
0101: PGAEAAFKLV AEAHSTLSDR TKKPAYDIKW RVASRIAPKQ GSELKQATGP KQGAQPKQAT QSKKAAIPKQ ATVPKQAAVP KQAPIPKQAT VPKQAPIPKQ
0201: AAVPKQTATE QMKKPGANRS SVAGGEPPVP STTVGQAIWT ICIHCRTRYQ YYSGVLNHRI RCQNCSKYFV ASKLNAHDVP SVFTSNSIKG VGQQSGFPSQ
0301: PDCSTKFSPR LNGDAKPLNG AQTAEHMKSA RAGGEEKFNH AGAGGKSGVE FSTGNMSKSS APSASDKAGG RMASDPAGPD VAYSKNPCSR VVDTPAEPGA
0401: TGSPSPRRSA RRKANHDAST PVPPSKKRRT LKDWFSNADT SCKKMFDDNV ARADGKTGEA HVPSKAHNEE RGSTAKEGNQ ESVKKEFTCD ASAAKDPCDS
0501: AQLTYPDPEF FDFDKGRDVN LFAVDQIWAV YDDRDGMPRY YARIKHVDAT KSTIRYTWLE HKAVNDEEDR WTDKELPVAC GKFNLGKTEV SQGALMFSHT
0601: VVPWVMGKRG CAYEIYPRKG EVWALYKGWS MQWCSDADNH KTYEYDVVEV LSDFTMEGGA AVFPLVKIKG FVSLFGKAID RSSFVIPSSE LLRFSHNIPF
0701: YRTKGNEKAG VAGGFLELDT VSLPSNLDAS FPSVTIDKTI SSGFIDASDI STPGPGNEPS AQKENQQSGG KRIDDSLEQT PRQKQKGGTA SVPGSSSQLF
0801: RSSPSTIATY PDSEFYNFEE GRSYNKFERG QIWALYSDLD KFPKYYGWVT KVDMEPFRLH LTWLEACPQL EQEKMWLKRD IPVSCGTFKL RNWRIKYDSN
0901: DAFSHLVETS QVNGQRFEIH PRVGEIWAIY NNDWAPDWVP SSDDACEYAV GEITERTEAS TKFSFLTPVD GYTAVFRFDN ERGILEIPAN ENLRFSHHIP
1001: SYRLTEEKSG TLRGFYELDP ASVPDAFLVR GGTC
0101: PGAEAAFKLV AEAHSTLSDR TKKPAYDIKW RVASRIAPKQ GSELKQATGP KQGAQPKQAT QSKKAAIPKQ ATVPKQAAVP KQAPIPKQAT VPKQAPIPKQ
0201: AAVPKQTATE QMKKPGANRS SVAGGEPPVP STTVGQAIWT ICIHCRTRYQ YYSGVLNHRI RCQNCSKYFV ASKLNAHDVP SVFTSNSIKG VGQQSGFPSQ
0301: PDCSTKFSPR LNGDAKPLNG AQTAEHMKSA RAGGEEKFNH AGAGGKSGVE FSTGNMSKSS APSASDKAGG RMASDPAGPD VAYSKNPCSR VVDTPAEPGA
0401: TGSPSPRRSA RRKANHDAST PVPPSKKRRT LKDWFSNADT SCKKMFDDNV ARADGKTGEA HVPSKAHNEE RGSTAKEGNQ ESVKKEFTCD ASAAKDPCDS
0501: AQLTYPDPEF FDFDKGRDVN LFAVDQIWAV YDDRDGMPRY YARIKHVDAT KSTIRYTWLE HKAVNDEEDR WTDKELPVAC GKFNLGKTEV SQGALMFSHT
0601: VVPWVMGKRG CAYEIYPRKG EVWALYKGWS MQWCSDADNH KTYEYDVVEV LSDFTMEGGA AVFPLVKIKG FVSLFGKAID RSSFVIPSSE LLRFSHNIPF
0701: YRTKGNEKAG VAGGFLELDT VSLPSNLDAS FPSVTIDKTI SSGFIDASDI STPGPGNEPS AQKENQQSGG KRIDDSLEQT PRQKQKGGTA SVPGSSSQLF
0801: RSSPSTIATY PDSEFYNFEE GRSYNKFERG QIWALYSDLD KFPKYYGWVT KVDMEPFRLH LTWLEACPQL EQEKMWLKRD IPVSCGTFKL RNWRIKYDSN
0901: DAFSHLVETS QVNGQRFEIH PRVGEIWAIY NNDWAPDWVP SSDDACEYAV GEITERTEAS TKFSFLTPVD GYTAVFRFDN ERGILEIPAN ENLRFSHHIP
1001: SYRLTEEKSG TLRGFYELDP ASVPDAFLVR GGTC
001: MNAQVGVAMG ISQNLEADNN SFLCDSGSAG AVPQKISGCA GLKFNDFDRL REGVKFEAGQ TWAIYNNTVD QMPRLYAQIR KVSAPCFSLR ITYLEPDPDG
101: EKETQWFEED LPVSVGKFRL GENKSTQDRS IFSHVIHCNE RSNTSCFSIT CRFIDTCHFS VSPRKGETWA LFKNWDIKWS SELDSHRKYE YEFVEILSDY
201: ADEAGVYVAY LHKAKGFASV FFRMGTGYEG IFRILPRSLY RFSHRVPSFK LTGDEGNGVA KDAYELDEAA LPETIEEFIM PSNSESETKS EHQAIYFASE
301: GKVFQTGQIW SFHSGYDDLP LYYGRIQKIT FTQAFKQDPV IKLHISRLKA TRFPEDVINW KYGGMPVGCG TFYARKVQEI ITPSEVSHQI MPQTSMDGIE
401: YTILPKIGEV WAIYRYWSRY IDVDRLEFGL YDIVEILDDT LDYKVQLLTQ QPVSDDRNDM EHRLFRACTE YTSNEDDGSE PIFTIPKTER IRFSNKVPAT
501: RVTKEMYGEL EDNSKVEFRA TPINVIHC
101: EKETQWFEED LPVSVGKFRL GENKSTQDRS IFSHVIHCNE RSNTSCFSIT CRFIDTCHFS VSPRKGETWA LFKNWDIKWS SELDSHRKYE YEFVEILSDY
201: ADEAGVYVAY LHKAKGFASV FFRMGTGYEG IFRILPRSLY RFSHRVPSFK LTGDEGNGVA KDAYELDEAA LPETIEEFIM PSNSESETKS EHQAIYFASE
301: GKVFQTGQIW SFHSGYDDLP LYYGRIQKIT FTQAFKQDPV IKLHISRLKA TRFPEDVINW KYGGMPVGCG TFYARKVQEI ITPSEVSHQI MPQTSMDGIE
401: YTILPKIGEV WAIYRYWSRY IDVDRLEFGL YDIVEILDDT LDYKVQLLTQ QPVSDDRNDM EHRLFRACTE YTSNEDDGSE PIFTIPKTER IRFSNKVPAT
501: RVTKEMYGEL EDNSKVEFRA TPINVIHC
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT5G18740.1); Has 30201 Blast hits to 17322 proteins in 780 /.../es: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G18730]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.