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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY29872 Canola cytosol 93.48 77.13
Bra039476.1-P Field mustard cytosol 23.91 42.72
AT4G27980.2 Thale cress cytosol 69.02 42.12
PGSC0003DMT400057888 Potato cytosol 17.66 32.83
Bra001194.1-P Field mustard cytosol 15.49 28.22
PGSC0003DMT400089411 Potato cytosol 15.76 25.89
Bra039461.1-P Field mustard cytosol 37.23 25.7
Bra039477.1-P Field mustard plastid 36.14 24.72
Solyc01g098330.1.1 Tomato nucleus 18.21 16.34
PGSC0003DMT400057893 Potato cytosol 21.47 16.32
PGSC0003DMT400057894 Potato cytosol 17.12 16.24
Solyc10g007630.1.1 Tomato cytosol 20.92 15.84
PGSC0003DMT400054841 Potato cytosol 20.92 15.59
Bra009972.1-P Field mustard nucleus 24.46 14.31
Bra006478.1-P Field mustard nucleus 20.65 14.29
Solyc01g098310.1.1 Tomato cytosol 17.12 13.82
Bra002183.1-P Field mustard nucleus 21.2 13.73
Bra006479.1-P Field mustard cytosol 19.57 13.04
KRG92798 Soybean cytosol 25.0 12.98
Bra006476.1-P Field mustard nucleus 20.65 12.93
Bra020757.1-P Field mustard nucleus 22.83 12.86
PGSC0003DMT400038431 Potato nucleus 27.45 12.83
Solyc08g029220.1.1 Tomato nucleus 27.45 12.8
GSMUA_Achr11P... Banana nucleus 22.55 12.69
Bra041167.1-P Field mustard cytosol, nucleus, plastid 2.17 12.31
Os11t0574200-00 Rice cytosol 10.87 12.23
TraesCS2D01G078000.1 Wheat cytosol 21.2 12.13
GSMUA_Achr2P02410_001 Banana cytosol 25.0 11.89
TraesCS4A01G214500.1 Wheat nucleus 21.2 11.64
Bra017315.1-P Field mustard nucleus 14.95 11.53
Bra006473.1-P Field mustard plastid 20.65 10.81
GSMUA_Achr5P00460_001 Banana cytosol 21.2 10.73
PGSC0003DMT400057887 Potato cytosol 24.46 10.69
Bra005331.1-P Field mustard nucleus 15.22 10.67
Bra034258.1-P Field mustard cytosol 17.93 10.66
Solyc01g098340.2.1 Tomato cytosol 22.83 10.5
Solyc01g098250.2.1 Tomato nucleus 27.99 10.37
TraesCS2A01G080400.1 Wheat cytosol 22.28 10.19
Bra035378.1-P Field mustard cytosol 19.02 10.17
Bra003079.1-P Field mustard cytosol 19.29 10.01
HORVU2Hr1G084660.1 Barley cytosol 23.64 10.0
TraesCS2B01G095100.1 Wheat cytosol 23.37 9.95
Zm00001d052947_P001 Maize plastid 23.37 9.94
Os01t0375100-01 Rice nucleus 26.36 9.62
TraesCS2D01G077700.1 Wheat cytosol 22.55 9.62
HORVU2Hr1G013270.2 Barley cytosol 22.55 9.55
TraesCS2B01G366100.1 Wheat cytosol 23.64 9.47
Bra007790.1-P Field mustard nucleus 15.22 9.46
PGSC0003DMT400057904 Potato nucleus 27.17 9.25
Bra013179.1-P Field mustard nucleus 17.39 9.24
TraesCS2A01G347700.1 Wheat mitochondrion 22.83 9.14
EES08665 Sorghum nucleus 16.85 9.13
TraesCS4B01G101500.1 Wheat cytosol 22.01 9.04
Zm00001d040846_P001 Maize cytosol 22.83 8.97
KRG96896 Soybean cytosol 25.27 8.79
EER88793 Sorghum cytosol 22.55 8.76
KRH68628 Soybean cytosol 25.27 8.72
HORVU4Hr1G043860.4 Barley cytosol 22.28 8.64
EES00793 Sorghum cytosol 22.83 8.6
Os11t0578100-00 Rice cytosol 24.18 8.45
TraesCS2A01G084900.1 Wheat nucleus 23.64 8.41
Bra040290.1-P Field mustard cytosol, mitochondrion 4.08 8.24
TraesCS6A01G167100.1 Wheat cytosol 21.74 8.2
HORVU7Hr1G050080.1 Barley nucleus 22.83 8.12
TraesCS6B01G194500.1 Wheat cytosol 21.47 8.09
TraesCS6D01G155600.1 Wheat cytosol 21.47 8.09
Zm00001d008412_P001 Maize cytosol 22.28 8.05
TraesCS3A01G213800.3 Wheat nucleus 22.28 8.02
TraesCS3D01G215900.1 Wheat nucleus 22.28 8.01
Zm00001d008413_P001 Maize cytosol 22.01 7.96
TraesCS3B01G244000.4 Wheat nucleus 22.28 7.93
KXG32106 Sorghum cytosol 21.74 7.91
Os06t0535300-01 Rice nucleus 21.74 7.86
TraesCS2B01G099600.2 Wheat nucleus 23.37 7.84
HORVU6Hr1G033850.1 Barley cytosol 20.65 7.79
KXG28768 Sorghum nucleus 20.65 7.79
TraesCS2D01G082800.1 Wheat nucleus 23.1 7.73
EES09993 Sorghum nucleus 22.83 7.62
Os11t0573800-00 Rice nucleus 18.75 7.52
OQU83710 Sorghum cytosol 19.84 7.49
EER98396 Sorghum nucleus 22.83 7.36
Zm00001d019461_P002 Maize cytosol 22.01 7.26
TraesCS2D01G077900.1 Wheat cytosol 10.6 7.22
OQU83714 Sorghum cytosol, nucleus, plastid 20.65 7.2
HORVU3Hr1G051850.2 Barley nucleus 22.01 7.16
TraesCS1B01G054900.1 Wheat nucleus 22.83 7.05
TraesCS1D01G042900.1 Wheat nucleus 22.55 6.96
HORVU1Hr1G008940.2 Barley nucleus 22.28 6.84
TraesCS1A01G042500.1 Wheat nucleus 22.01 6.81
Bra001216.1-P Field mustard cytosol 4.08 6.64
OQU83709 Sorghum cytosol 20.92 6.63
Bra002182.1-P Field mustard nucleus 19.29 6.54
Bra039474.1-P Field mustard nucleus 26.63 6.42
Bra006477.1-P Field mustard cytosol 21.47 5.75
Bra038959.1-P Field mustard nucleus 4.62 4.42
Bra040300.1-P Field mustard cytosol 2.72 2.71
Bra013403.1-P Field mustard nucleus 3.8 2.58
KRH34004 Soybean cytosol 2.17 2.52
Bra002184.1-P Field mustard cytosol 1.63 2.29
KRH34003 Soybean cytosol 1.63 2.06
Bra020956.1-P Field mustard nucleus 1.63 1.72
Bra013404.1-P Field mustard nucleus 1.63 1.35
Bra020957.1-P Field mustard cytosol 0.54 0.97
Bra020955.1-P Field mustard cytosol 0.27 0.35
Bra020958.1-P Field mustard cytosol 0.0 0.0
Bra031906.1-P Field mustard cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:Bra024236.1EnsemblPlants:Bra024236.1-PEnsemblPlantsGene:Bra024236InterPro:DUF3444ncoils:CoilPANTHER:PTHR10825
PANTHER:PTHR10825:SF4PFAM:PF11926SEG:segUniParc:UPI0002540BA5UniProt:M4E632MapMan:35.2
Description
AT4G27980 (E=1e-099) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04960.3); Has 63680 Blast hits to 35236 proteins in 1593 species: Archae - 730; Bacteria - 6914; Metazoa - 32637; Fungi - 4186; Plants - 2109; Viruses - 194; Other Eukaryotes - 16910 (source: NCBI BLink).
Coordinates
chrA03:+:26734494..26735600
Molecular Weight (calculated)
42313.9 Da
IEP (calculated)
5.049
GRAVY (calculated)
-0.786
Length
368 amino acids
Sequence
(BLAST)
001: MERLSSLEEA IKVIYAELKR KEERFELKQK EEADRWREET ELKRKDLEIR EKTLEERMKE LQLKQMELEE RSKQSAETRK RSNHAVEQDN DAGSLTPAKK
101: HKPEEADLGC ASKDGDIGGI VCKDPKPLTC PDTKFNGFGK SMSSFAVDQV WALHDPRDDM PRIYAQIRRI FSSQFSLQVT LLEHVETTKE EKSILSSACG
201: RFEYGDTEIR SHLLFAHEMD NIKCDKSVIV NPRKGETWAL FKDWDISWKS QSDLHEPPYR YDLVEIITEF DDQQGISVAY MGRVEGFESV LNRVEQHGLI
301: KIICPGEMQR FSHKVSPGSF KLDPAAAQGY DPVLEEVVDT RIQSKECDKA PTAETQEGST KNQPIILE
Best Arabidopsis Sequence Match ( AT4G27980.1 )
(BLAST)
001: MAMQGDSVES DVTEQNSEGY LKILDKIQAK SSSIFEFSLQ FDDVVASLEK KEERLRVVEM KEKEIGLLEE SISRRLSVLE EKEIETDLRL VIEASIMRLV
101: LEKQSEDLVT QLKTEENKLG LFLRSTTKKL EELVSEFDGR KEEACRVSEK LCELEKAEKE FHLKQRAETE RRNEESEARE KDLRALEEAV KEKTAELKRK
201: EETLELKMKE EAEKLREETE LMRKGLEIKE KTLEKRLKEL ELKQMELEET SRPQLVEAES RKRSNLEIEP PLLVKNDSDA DSCTPQAKKQ KSQEANDGDI
301: EGIVCTDKSY EDPNSLTCPD TKLNDFSKSM SSFAVDQVWA LYDPRDDMPR NYAQIREIFE SQLSLQVTLL EHVKTTKDEQ SILSGCGRFE YGDTEIKSHL
401: MFAHEMDHIK SAEEVIVNPR KGETWALFSD WNASWNSHLE LQELPYRYDF VEVISEFDDL IGIQVAYMGR VEGYESVFNH AEQYGCIKIV IPPAEMQRFS
501: HKVESVKLSG KEEEGIPFRS FKLNPAAMPR YYHVLEEVVE TEIQIKDPTV VHQNGSTKDL PIIID
Arabidopsis Description
Domain of unknown function (DUF3444) [Source:TAIR;Acc:AT4G27980]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.