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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 3
  • plastid 4
  • cytosol 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:nucleus
Predotar:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra039476.1-P Field mustard cytosol 26.58 69.42
AT3G04960.3 Thale cress cytosol 45.54 40.5
PGSC0003DMT400057888 Potato cytosol 13.94 37.88
Bra024236.1-P Field mustard nucleus 24.72 36.14
PGSC0003DMT400089411 Potato cytosol 14.5 34.82
Bra001194.1-P Field mustard cytosol 12.08 32.18
Bra039461.1-P Field mustard cytosol 29.93 30.21
Solyc10g007630.1.1 Tomato cytosol 18.59 20.58
Bra009972.1-P Field mustard nucleus 23.23 19.87
PGSC0003DMT400057894 Potato cytosol 14.31 19.85
PGSC0003DMT400054841 Potato cytosol 18.03 19.64
PGSC0003DMT400057893 Potato cytosol 17.1 19.01
Solyc01g098310.1.1 Tomato cytosol 15.99 18.86
Bra041167.1-P Field mustard cytosol, nucleus, plastid 2.23 18.46
Bra006478.1-P Field mustard nucleus 17.84 18.05
Bra002183.1-P Field mustard nucleus 17.84 16.9
Bra020757.1-P Field mustard nucleus 20.45 16.85
GSMUA_Achr11P... Banana nucleus 20.45 16.82
Bra006479.1-P Field mustard cytosol 16.54 16.12
Solyc01g098330.1.1 Tomato nucleus 12.27 16.1
Bra034258.1-P Field mustard cytosol 18.4 15.99
Bra006476.1-P Field mustard nucleus 17.47 15.99
KRG92798 Soybean cytosol 21.0 15.94
Os11t0574200-00 Rice cytosol 9.67 15.9
Bra017315.1-P Field mustard nucleus 13.94 15.72
GSMUA_Achr2P02410_001 Banana cytosol 21.56 14.99
Bra006473.1-P Field mustard plastid 19.52 14.94
TraesCS2D01G078000.1 Wheat cytosol 17.47 14.62
Bra005331.1-P Field mustard nucleus 14.13 14.48
Solyc08g029220.1.1 Tomato nucleus 20.82 14.2
TraesCS4A01G214500.1 Wheat nucleus 17.66 14.18
Bra003079.1-P Field mustard cytosol 18.59 14.1
PGSC0003DMT400038431 Potato nucleus 20.63 14.1
GSMUA_Achr5P00460_001 Banana cytosol 18.96 14.03
Bra035378.1-P Field mustard cytosol 17.66 13.81
Bra007790.1-P Field mustard nucleus 14.87 13.51
Bra013179.1-P Field mustard nucleus 17.29 13.42
Solyc01g098250.2.1 Tomato nucleus 23.98 12.99
Solyc01g098340.2.1 Tomato cytosol 19.14 12.88
Zm00001d008412_P001 Maize cytosol 23.98 12.66
EER88793 Sorghum cytosol 22.3 12.66
Zm00001d040846_P001 Maize cytosol 21.75 12.5
KXG32106 Sorghum cytosol 23.42 12.46
TraesCS6A01G167100.1 Wheat cytosol 22.49 12.4
TraesCS6B01G194500.1 Wheat cytosol 22.49 12.4
Zm00001d008413_P001 Maize cytosol 23.42 12.38
TraesCS6D01G155600.1 Wheat cytosol 22.3 12.3
TraesCS4B01G101500.1 Wheat cytosol 20.45 12.28
PGSC0003DMT400057887 Potato cytosol 19.14 12.23
HORVU6Hr1G033850.1 Barley cytosol 22.12 12.21
Os01t0375100-01 Rice nucleus 22.86 12.2
HORVU2Hr1G084660.1 Barley cytosol 19.7 12.18
Os06t0535300-01 Rice nucleus 23.05 12.18
TraesCS2D01G077700.1 Wheat cytosol 19.52 12.17
TraesCS2B01G095100.1 Wheat cytosol 19.52 12.15
HORVU2Hr1G013270.2 Barley cytosol 19.52 12.08
EES08665 Sorghum nucleus 15.24 12.08
TraesCS2A01G080400.1 Wheat cytosol 17.84 11.93
Zm00001d052947_P001 Maize plastid 19.14 11.91
KRG96896 Soybean cytosol 23.05 11.72
EES00793 Sorghum cytosol 21.19 11.67
PGSC0003DMT400057904 Potato nucleus 23.42 11.66
Bra040290.1-P Field mustard cytosol, mitochondrion 3.9 11.54
TraesCS2A01G347700.1 Wheat mitochondrion 19.52 11.43
TraesCS2B01G366100.1 Wheat cytosol 19.52 11.43
KRH68628 Soybean cytosol 22.49 11.34
Os11t0578100-00 Rice cytosol 22.12 11.3
KXG28768 Sorghum nucleus 19.89 10.97
HORVU7Hr1G050080.1 Barley nucleus 21.0 10.93
TraesCS2A01G084900.1 Wheat nucleus 21.0 10.93
TraesCS3A01G213800.3 Wheat nucleus 20.63 10.85
TraesCS3D01G215900.1 Wheat nucleus 20.63 10.84
TraesCS3B01G244000.4 Wheat nucleus 20.82 10.83
HORVU4Hr1G043860.4 Barley cytosol 18.96 10.75
EER98396 Sorghum nucleus 21.93 10.34
EES09993 Sorghum nucleus 21.19 10.34
HORVU3Hr1G051850.2 Barley nucleus 21.56 10.26
TraesCS2B01G099600.2 Wheat nucleus 20.82 10.21
OQU83710 Sorghum cytosol 18.4 10.16
TraesCS2D01G082800.1 Wheat nucleus 20.63 10.1
Zm00001d019461_P002 Maize cytosol 20.63 9.95
TraesCS1B01G054900.1 Wheat nucleus 21.93 9.9
TraesCS1D01G042900.1 Wheat nucleus 21.93 9.9
Os11t0573800-00 Rice nucleus 16.54 9.69
TraesCS1A01G042500.1 Wheat nucleus 21.19 9.58
HORVU1Hr1G008940.2 Barley nucleus 21.19 9.52
OQU83709 Sorghum cytosol 20.26 9.38
Bra001216.1-P Field mustard cytosol 3.9 9.29
OQU83714 Sorghum cytosol, nucleus, plastid 18.03 9.19
Bra002182.1-P Field mustard nucleus 17.1 8.48
Bra039474.1-P Field mustard nucleus 23.98 8.45
Bra038959.1-P Field mustard nucleus 5.76 8.05
TraesCS2D01G077900.1 Wheat cytosol 7.99 7.96
Bra040300.1-P Field mustard cytosol 5.39 7.86
Bra031906.1-P Field mustard cytosol 1.3 7.61
Bra006477.1-P Field mustard cytosol 19.33 7.56
Bra020957.1-P Field mustard cytosol 2.6 6.8
KRH34003 Soybean cytosol 3.16 5.84
Bra020956.1-P Field mustard nucleus 3.72 5.73
KRH34004 Soybean cytosol 3.35 5.66
Bra013404.1-P Field mustard nucleus 4.65 5.61
Bra013403.1-P Field mustard nucleus 5.39 5.35
Bra002184.1-P Field mustard cytosol 2.6 5.34
Bra020955.1-P Field mustard cytosol 2.42 4.61
Bra020958.1-P Field mustard cytosol 0.74 3.92
Protein Annotations
EnsemblPlants:Bra039477.1EnsemblPlants:Bra039477.1-PEnsemblPlantsGene:Bra039477Gene3D:3.10.450.50InterPro:DUF3444InterPro:SEC_C_motif
ncoils:CoilPANTHER:PTHR10825PANTHER:PTHR10825:SF4PFAM:PF02810PFAM:PF11926SEG:seg
SUPFAM:SSF103642UniParc:UPI00025474A5UniProt:M4FEF6MapMan:35.2::
Description
AT3G04960 (E=3e-081) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27980.1); Has 17810 Blast hits to 12112 proteins in 728 species: Archae - 198; Bacteria - 1231; Metazoa - 8565; Fungi - 1136; Plants - 665; Viruses - 38; Other Eukaryotes - 5977 (source: NCBI BLink).
Coordinates
chrA05:-:23508368..23511284
Molecular Weight (calculated)
61979.8 Da
IEP (calculated)
7.573
GRAVY (calculated)
-0.885
Length
538 amino acids
Sequence
(BLAST)
001: MMGTTPMYMA RSNLAKSGQI SRNALCPCGS RKRYKRCCGK SHDDRTSVNR TVHDSGHRAG FRGYRFKASV ERIRGGVCVD EETVRKHVLE AKKKEEESDV
101: KHSLETHVMM LALEMQTEEE VAKKHEELKK EVQVKKEELE ARENELKKRE DELEAKRKSL EVKEKNFEEL MRLHDETMKE ESTEIEKRNQ KQEAEAREIE
201: VKRHSLELKE KQLEEREERA KSRKRSRDED CLTRKKHKHD AKEKETASDE DPEPYSCPDA DFNTFNNNTI SSFAVGQVWA LYDPSDEMPR YYARIRKVLE
301: PKLRVGIRWL ESKPAPIACG EFKYGEKTTS SHLMFSHEMH HVRTGKKTVS INPRKGETWA LFRDCKQHKR PYGYEFVQIE SELDSDHGVG VAYLGRVEGF
401: TSVYELAEQH GLLKMMIPSD EMLRFSHRVP SFKLTGDEKK GVPAGSFELD PAAIPKDCLE PLKVYNVCDE FSLQEMRGMS CLLSFCALLH ILNGESEVKK
501: RKCFGLCGRS SVHDHDESEA KAEAIVKGNM GARGILLD
Best Arabidopsis Sequence Match ( AT3G04960.1 )
(BLAST)
001: MVVDSDLEGL DQRKEEMRNI FDDIQDKASL ILQFSLKWEE IDDRFGFLKQ RAMEKEVSVR NQILELEKKE ERLRLVEERE RKIEASFSTL QEKGNESDLI
101: LLMEANVMRL VLQMQFEQVV VAQLNAQENF LGSLHDSMMK KHEELMTELE ARKNEVALIS KTIDAKTCDL DMKVKDFDLK QTTESERMRK ETELMETSLK
201: QLEARENELR LLNETIQGKS MELEKKEVNF QLKHEAAARE TEVKNKFLEL KEKKLEEREQ HLELKQRKKE KPAIRAETRK RSRLEYESPL SAEKGRYAET
301: LIRPGKKQVQ KREAHEIIYI DEDEPFNCPD PDFHDFNNTM SSFAVGQVWA LYDPVDDMPR YYAEIRKVLQ PQLSLRVTWL ESLQTTEEPI PACGRFEHGK
401: SETSSHLMFS HEMYHTIRGQ YVTINPRKGE TWALFGDWTK TWKSHSEQQK TPYSYDFVEV VTEFDSDRGI GVAYLGRVEG FTSVYERAAQ NGLVEIMISC
501: DEMLRFSHRV PSFKMTGDEK EGVPAGSFEL DPAAVPRVYL KDAKVKEEKM EPIVLV
Arabidopsis Description
Trichohyalin, putative (DUF3444) [Source:UniProtKB/TrEMBL;Acc:F4J631]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.