Skip to main content
crop-pal logo
Sorghum
Search for another protein from :
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • extracellular 1
  • cytosol 1
  • golgi 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, extracellular, golgi, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:extracellular
MultiLoc:cytosol
Plant-mPloc:golgi, nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d052947_P001 Maize plastid 64.1 81.73
Os11t0578100-00 Rice cytosol 54.22 56.79
TraesCS2A01G084900.1 Wheat nucleus 52.49 56.0
HORVU7Hr1G050080.1 Barley nucleus 51.95 55.42
Os11t0574200-00 Rice cytosol 15.59 52.6
TraesCS2D01G082800.1 Wheat nucleus 52.4 52.59
TraesCS2B01G099600.2 Wheat nucleus 52.13 52.42
KXG28768 Sorghum nucleus 43.52 49.23
EES00793 Sorghum cytosol 42.97 48.52
EER88793 Sorghum cytosol 39.71 46.2
OQU83710 Sorghum cytosol 36.36 41.17
OQU83709 Sorghum cytosol 41.8 39.67
Bra039476.1-P Field mustard cytosol 7.16 38.35
PGSC0003DMT400057888 Potato cytosol 6.8 37.88
PGSC0003DMT400089411 Potato cytosol 7.25 35.71
VIT_05s0020g02050.t01 Wine grape nucleus 27.02 35.69
Solyc01g067770.1.1 Tomato extracellular, vacuole 8.61 34.8
CDX74107 Canola cytosol 8.43 34.7
KRH50936 Soybean nucleus 29.47 33.92
CDY13919 Canola nucleus 14.32 33.47
KRH21004 Soybean nucleus 29.19 33.26
KRH11282 Soybean nucleus 29.1 33.16
EES08665 Sorghum nucleus 20.31 32.99
Bra001194.1-P Field mustard cytosol 5.89 32.18
CDX74108 Canola cytosol 5.89 32.18
PGSC0003DMT400058792 Potato nucleus 26.65 32.06
Solyc01g067780.1.1 Tomato cytosol 26.2 32.0
KXG32106 Sorghum cytosol 28.83 31.45
PGSC0003DMT400058788 Potato nucleus 13.78 31.08
OQU83714 Sorghum cytosol, nucleus, plastid 29.74 31.06
PGSC0003DMT400094016 Potato nucleus 8.25 31.06
CDX88917 Canola nucleus 9.34 31.02
KRH02180 Soybean cytosol, nucleus, plastid 29.28 30.94
OQU79981 Sorghum cytosol 8.88 30.91
CDX92582 Canola nucleus 23.57 30.88
EER98396 Sorghum nucleus 31.28 30.24
Solyc01g098250.2.1 Tomato nucleus 26.84 29.81
Bra006478.1-P Field mustard nucleus 14.23 29.51
CDX88918 Canola cytosol 14.14 29.32
CDY13918 Canola nucleus 14.96 28.8
CDY24701 Canola nucleus 15.32 28.69
KRH34004 Soybean cytosol 8.25 28.62
CDY08056 Canola nucleus 16.14 28.34
PGSC0003DMT400057904 Potato nucleus 27.56 28.12
CDX70843 Canola extracellular, golgi 13.78 28.1
CDX99992 Canola cytosol 23.93 28.06
Bra002183.1-P Field mustard nucleus 14.42 27.99
KRG92798 Soybean cytosol 17.95 27.93
CDY19714 Canola nucleus 24.3 27.86
Bra009972.1-P Field mustard nucleus 15.87 27.82
CDX86172 Canola nucleus 15.87 27.82
Bra006479.1-P Field mustard cytosol 13.87 27.72
VIT_14s0030g00640.t01 Wine grape nucleus 29.37 27.72
KRG96896 Soybean cytosol 26.56 27.69
CDX70837 Canola mitochondrion 12.6 27.58
PGSC0003DMT400086601 Potato cytosol 4.99 27.36
Solyc08g029220.1.1 Tomato nucleus 19.49 27.25
KRH68628 Soybean cytosol 26.2 27.09
PGSC0003DMT400038431 Potato nucleus 19.22 26.94
CDX80667 Canola nucleus 16.14 26.77
Solyc10g007630.1.1 Tomato cytosol 11.79 26.75
Solyc01g098340.2.1 Tomato cytosol 19.22 26.5
CDY05255 Canola nucleus 15.87 26.43
PGSC0003DMT400054841 Potato cytosol 11.79 26.32
Bra020757.1-P Field mustard nucleus 15.5 26.19
CDY27809 Canola nucleus 23.21 25.81
KRH34003 Soybean cytosol 6.8 25.77
PGSC0003DMT400057894 Potato cytosol 9.07 25.77
CDX70840 Canola nucleus 13.42 25.34
Bra006476.1-P Field mustard nucleus 13.42 25.17
CDX88920 Canola nucleus 13.42 25.17
PGSC0003DMT400057887 Potato cytosol 18.86 24.7
EES07899 Sorghum cytosol 16.23 24.35
OQU85000 Sorghum cytosol 15.96 24.18
PGSC0003DMT400057893 Potato cytosol 10.61 24.17
EES10633 Sorghum cytosol 16.05 24.08
Solyc01g098310.1.1 Tomato cytosol 9.88 23.9
CDX88924 Canola plastid 15.23 23.76
Bra006473.1-P Field mustard plastid 15.14 23.76
EES10933 Sorghum cytosol 15.41 23.48
KXG34037 Sorghum cytosol 16.05 23.11
Bra024236.1-P Field mustard nucleus 7.62 22.83
KXG32108 Sorghum cytosol 12.33 22.55
CDX92586 Canola nucleus 7.07 22.29
CDY41919 Canola nucleus, plastid 24.03 22.25
AT5G37760.1 Thale cress cytosol 4.17 22.22
AT4G19590.2 Thale cress nucleus 7.52 22.19
CDY27811 Canola nucleus 9.52 21.92
EES11310 Sorghum cytosol, plastid 9.7 21.75
Solyc01g098330.1.1 Tomato nucleus 7.98 21.46
CDY41935 Canola cytosol 10.34 21.43
CDX92856 Canola nucleus 9.07 21.28
KXG34016 Sorghum nucleus 15.96 21.23
Bra039477.1-P Field mustard plastid 10.34 21.19
Bra039461.1-P Field mustard cytosol 10.15 21.01
CDY27796 Canola cytosol 10.06 20.98
KXG19130 Sorghum cytosol 9.43 20.55
CDY29872 Canola cytosol 8.07 19.96
KXG37199 Sorghum cytosol 4.9 19.71
CDY13917 Canola endoplasmic reticulum, extracellular, mitochondrion 5.17 13.67
Bra002182.1-P Field mustard nucleus 13.15 13.36
CDX70844 Canola mitochondrion, plasma membrane 10.34 13.35
Bra039474.1-P Field mustard nucleus 18.13 13.11
Bra006477.1-P Field mustard cytosol 15.41 12.36
CDY41917 Canola nucleus 10.06 11.61
CDX70841 Canola nucleus 15.05 11.47
CDX88919 Canola cytosol 14.51 10.12
Protein Annotations
Gene3D:1.10.287.110MapMan:35.2EntrezGene:8071961UniProt:C5Y4Y8InterPro:DUF3444InterPro:DnaJ_domain
InterPro:DnaJ_domain_CSEnsemblPlants:EES09993ProteinID:EES09993ProteinID:EES09993.1InterPro:IPR001623InterPro:IPR036869
InterPro:J_dom_sfProteinID:KXG28769.1ProteinID:KXG28770.1PFAM:PF00226PFAM:PF11926PRINTS:PR00625
ScanProsite:PS00636PFscan:PS50076PANTHER:PTHR10825PANTHER:PTHR10825:SF27SMART:SM00271EnsemblPlantsGene:SORBI_3005G163600
SUPFAM:SSF46565UniParc:UPI0001A86C43RefSeq:XP_002451005.1SEG:seg::
Description
hypothetical protein
Coordinates
chr5:-:63887554..63895004
Molecular Weight (calculated)
123968.0 Da
IEP (calculated)
5.790
GRAVY (calculated)
-0.665
Length
1103 amino acids
Sequence
(BLAST)
0001: MVGCNREEAL RAREIAVKKM ENKEFFGAQK IVLKAQKLFP DLENVSQLLS ICNVHCAAEL RVNGEMDFYG VLQVEEGADE ALIKKQYRKL AFSLHPDKNC
0101: FAGAEAAFKL VAEAHSVLCD TAKRNDYDLK RRNGFRNVPK PAKQQKRTDS HKQSMPGSRE TFWTICSNCQ IQYQYYSNIL NTMVRCLNCK RNFFAYKLNQ
0201: QPMSTSSSVN SSQVPSSRFV NTQRDTPSQQ GHPVNPSSVR RDTDVKPNGS QDPAHMFRNQ QHGIYSQNGH HVKPSAGRDT DAKPRMNVAK RDEYMKGKAN
0301: DPEVLRGKFQ FSTLNQDKSS VPMGNGDMQG RPPISDPADP NIVDTQKSVQ GDASAVPDAM DLPGSAKPSS AGGNIDGDAR INVAGSRSMP DPVDLNITSR
0401: RDLHRQDAST APTGAGSSGT QSSVKRKTYA DGNVCLHTDT NKRLMKNNFP SDVNLSCKQV CDDGVTNAGI QSDPPHVSGG NVDTQQKPKV ADISDHQVNI
0501: KEKATETDSD QDNIMEEAPQ TVSEKVNIKE KATETDSDQD NVMEEAPQTV SEKKPSYSVQ VTLPDPDFFN FEKIKDINVF QVGQIWALYD NLDGMPRYYA
0601: RIKHFDASNF KVHLTWLLYV AMNEDEENWT DEELPTACGN FCLGKGTDIS EDKEMFSHIA SWTKGKKRNS YVIYPNKGEV WALHKGWSMD WSSDADNHRS
0701: YEYEVVQVVS SMSANGGATV IPLVRIEGFV SLFATAKDKS PFVIPSSELL RFSHMIPFYR TKGNEKVGAP RGFLELDTAC LPADLDAAFS SVTLDSYMSL
0801: SKKESSTPVN VTTDNTCWCW DLGDDQIAQK ENHPEEHIGH PMSTDNPSPE QNTPLKKTAG DANEFSDCSL QGSLSPNIYT YPDSHFHQFE ESRSCEKFER
0901: GQVWALYNDI DKLPKFYAWI KKVREEPFRV EVIWLETFPK QDQEKQWLEQ NIPISCGTFK ILKWRAEYDT SDTFSHQVHF RETGKKRELE ILPQVGDIWA
1001: VYMNWAPDWI PCSVDACEFA ICEVVECTEA STKLTFLAQV SGYRTVFKPD KQRGVLEVPA AEKLRFSHQI PYFCLTEEGG GSLRGFYELD PASVPDAFLY
1101: RDT
Best Arabidopsis Sequence Match ( AT3G04980.2 )
(BLAST)
0001: MECNKEDAIR ASKIAEEKME AGDFVGAHKF VTKAQRLFPN LENIVQMMTI CDVHSSAIKK IKGLDDWYGV LQVQPYADAD TIKKQYRKLA LLLHPDKNKF
0101: AGAEAAFKLV GEANRLLSDQ IKRSQYDNRY RSHSMFANRH VNVYSGRHCA ATNNAAENIA GVFTFWTRCR HCGQCYKYLR EYMNTSMHCS SCQKSFVACK
0201: MRCDGVPPSS STAGRKEFQD QVMSNTSRQN ASTAAESGSS AADMGKNGKV GGKVNKKNQE KQKNGAVNRG TKKEEGCTEN DAEGRKPQTS ETGTNISAEM
0301: PKADVLKPQH QVKEEPDTSA EKSIPDLSAP QKNRAPKKKR KVVEESSKSF EVDSSDTAGA KTDTNEHNKR KSSRKKPQVS YAKEGSDGDF VSPPNKKTKS
0401: GFEFESEPNK KQTAEDNKSP KLAVSGVSSA SSHSYKGKAK KNAHSGNEDN LSAKNKVSEG CDGNGEDAAL LSKIGRVEKG YKANENSNPL DIPDLEFSVF
0501: KVERKTEDFA VNQVWSTTTD CRDGMPRKYA RVKKVLNGEF KLRITYLDPV LDKTDESIPV ACGKFKNGKT MEVKDSSIFS GQMHHLRCNN IVSIYPRKGE
0601: IWAIFREWEE EWNTSLKKHK FPYKYDFVEI VSDFHDLNGV GVAYLGKLKG SVQLFHWEPQ HGICQIQCSP KDMLRFSHKV PAVKMTGKEK ESVPPNSYEL
0701: DPAALPKDIF QVDAVDMEMD SEILKGKADG PYKVGAKAKA VQETASSPRK RQKSDDDNDD GVCSNLGEVI GGSNRSHIFS SCEVDDKNTS TKSRKDGEST
0801: DVFRLRKSPR LQTIPNHQGD EKKSAKQGNK MNTPKKMDKG LVTDSLGVDE KKTSKSRKNG EATDVFKLRK SPRLQTIPSQ QGDEMKSTKQ GNKMNTPKKT
0901: DKGLETDSLG VRKSPNGIHQ PAESQEGESS KKQGCNGEIP SLSKQNDLPT QLGGSTYKSP RTTHVSPHCK TPRRNAFDFQ NLRSEDKFEV NQIWAIYSND
1001: NGMPLEYVKI KKIETKPKFV LRGTPTELYP PSTEPVTRTV SCGEFKLLKG RPKIIPHASF SHLVKPFDSS KRFRFKVYPR KGEIWALYKN CDSTEEPDIV
1101: EVVEDNCDGE IVKVVALTAM GSSFQRKQGS DVGLIDISKA EMSRFSHQIP AIRHPKKTTR LVKGGYYWEL DPIAIPSRTI VID
Arabidopsis Description
DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPC5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.