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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY27796 Canola cytosol 88.93 89.6
CDY41935 Canola cytosol 80.86 81.02
Bra039476.1-P Field mustard cytosol 20.45 52.91
Bra024236.1-P Field mustard nucleus 25.7 37.23
PGSC0003DMT400057888 Potato cytosol 13.32 35.86
Bra001194.1-P Field mustard cytosol 13.13 34.65
PGSC0003DMT400089411 Potato cytosol 12.76 30.36
Bra039477.1-P Field mustard plastid 30.21 29.93
Solyc10g007630.1.1 Tomato cytosol 19.14 20.99
Bra009972.1-P Field mustard nucleus 24.02 20.35
PGSC0003DMT400054841 Potato cytosol 18.76 20.24
Bra020958.1-P Field mustard cytosol 3.75 19.61
PGSC0003DMT400057893 Potato cytosol 17.64 19.42
PGSC0003DMT400057894 Potato cytosol 14.07 19.33
Bra020757.1-P Field mustard nucleus 22.33 18.22
Solyc01g098310.1.1 Tomato cytosol 15.57 18.2
Bra034258.1-P Field mustard cytosol 20.07 17.29
Bra017315.1-P Field mustard nucleus 15.38 17.19
Bra041167.1-P Field mustard cytosol, nucleus, plastid 2.06 16.92
GSMUA_Achr11P... Banana nucleus 20.45 16.67
KRG92798 Soybean cytosol 22.14 16.64
PGSC0003DMT400038431 Potato nucleus 24.39 16.52
Solyc08g029220.1.1 Tomato nucleus 24.2 16.35
Bra031906.1-P Field mustard cytosol 2.81 16.3
Bra003079.1-P Field mustard cytosol 21.58 16.22
Bra006478.1-P Field mustard nucleus 16.14 16.17
Solyc01g098330.1.1 Tomato nucleus 12.2 15.85
Bra013179.1-P Field mustard nucleus 20.45 15.73
Bra007790.1-P Field mustard nucleus 17.45 15.71
Bra002183.1-P Field mustard nucleus 16.7 15.67
Bra005331.1-P Field mustard nucleus 15.38 15.62
Bra035378.1-P Field mustard cytosol 19.7 15.26
GSMUA_Achr2P02410_001 Banana cytosol 21.76 14.99
Bra006476.1-P Field mustard nucleus 16.51 14.97
Bra006479.1-P Field mustard cytosol 15.38 14.86
GSMUA_Achr5P00460_001 Banana cytosol 19.32 14.17
Bra001216.1-P Field mustard cytosol 6.0 14.16
Os11t0574200-00 Rice cytosol 8.63 14.07
EES08665 Sorghum nucleus 17.45 13.7
TraesCS4B01G101500.1 Wheat cytosol 22.33 13.28
TraesCS2D01G078000.1 Wheat cytosol 15.95 13.22
Solyc01g098340.2.1 Tomato cytosol 19.14 12.75
Bra040290.1-P Field mustard cytosol, mitochondrion 4.32 12.64
Bra006473.1-P Field mustard plastid 16.51 12.52
HORVU4Hr1G043860.4 Barley cytosol 21.95 12.33
Zm00001d040846_P001 Maize cytosol 21.58 12.29
Solyc01g098250.2.1 Tomato nucleus 22.51 12.08
EES00793 Sorghum cytosol 22.14 12.08
EER88793 Sorghum cytosol 21.39 12.03
Bra038959.1-P Field mustard nucleus 8.63 11.95
TraesCS4A01G214500.1 Wheat nucleus 15.01 11.94
Os01t0375100-01 Rice nucleus 22.51 11.9
PGSC0003DMT400057887 Potato cytosol 18.57 11.76
OQU83710 Sorghum cytosol 21.39 11.7
TraesCS2A01G084900.1 Wheat nucleus 22.33 11.51
Zm00001d008412_P001 Maize cytosol 21.95 11.48
KXG32106 Sorghum cytosol 21.76 11.47
Os06t0535300-01 Rice nucleus 21.76 11.39
Zm00001d008413_P001 Maize cytosol 21.76 11.39
PGSC0003DMT400057904 Potato nucleus 23.08 11.38
TraesCS3D01G215900.1 Wheat nucleus 21.76 11.33
TraesCS3A01G213800.3 Wheat nucleus 21.58 11.24
Os11t0573800-00 Rice nucleus 19.32 11.22
HORVU7Hr1G050080.1 Barley nucleus 21.76 11.22
TraesCS3B01G244000.4 Wheat nucleus 21.58 11.12
KXG28768 Sorghum nucleus 20.26 11.08
TraesCS6A01G167100.1 Wheat cytosol 20.26 11.07
KRG96896 Soybean cytosol 21.76 10.96
TraesCS6B01G194500.1 Wheat cytosol 20.07 10.96
TraesCS6D01G155600.1 Wheat cytosol 20.07 10.96
HORVU6Hr1G033850.1 Barley cytosol 19.89 10.87
KRH68628 Soybean cytosol 21.76 10.87
TraesCS2D01G082800.1 Wheat nucleus 22.33 10.83
Os11t0578100-00 Rice cytosol 21.39 10.83
TraesCS2B01G099600.2 Wheat nucleus 22.14 10.76
TraesCS2A01G080400.1 Wheat cytosol 16.14 10.68
Bra020957.1-P Field mustard cytosol 4.13 10.68
Bra040300.1-P Field mustard cytosol 7.32 10.57
TraesCS1B01G054900.1 Wheat nucleus 22.89 10.23
EES09993 Sorghum nucleus 21.01 10.15
TraesCS1D01G042900.1 Wheat nucleus 22.7 10.15
TraesCS1A01G042500.1 Wheat nucleus 22.51 10.08
Bra020956.1-P Field mustard nucleus 6.57 10.03
HORVU1Hr1G008940.2 Barley nucleus 22.51 10.02
HORVU2Hr1G084660.1 Barley cytosol 16.32 10.0
HORVU3Hr1G051850.2 Barley nucleus 21.2 9.99
Zm00001d052947_P001 Maize plastid 16.14 9.94
EER98396 Sorghum nucleus 21.2 9.9
TraesCS2D01G077700.1 Wheat cytosol 15.76 9.73
TraesCS2B01G095100.1 Wheat cytosol 15.76 9.72
Zm00001d019461_P002 Maize cytosol 20.26 9.68
HORVU2Hr1G013270.2 Barley cytosol 15.76 9.67
TraesCS2A01G347700.1 Wheat mitochondrion 16.32 9.47
TraesCS2B01G366100.1 Wheat cytosol 15.95 9.25
Bra020955.1-P Field mustard cytosol 4.88 9.22
KRH34003 Soybean cytosol 4.88 8.93
OQU83714 Sorghum cytosol, nucleus, plastid 17.64 8.9
OQU83709 Sorghum cytosol 19.32 8.86
KRH34004 Soybean cytosol 5.25 8.81
Bra013403.1-P Field mustard nucleus 8.26 8.12
Bra002182.1-P Field mustard nucleus 15.57 7.65
Bra013404.1-P Field mustard nucleus 6.19 7.4
Bra039474.1-P Field mustard nucleus 20.64 7.21
TraesCS2D01G077900.1 Wheat cytosol 6.94 6.85
Bra006477.1-P Field mustard cytosol 17.64 6.84
Bra002184.1-P Field mustard cytosol 0.19 0.38
Protein Annotations
EnsemblPlants:Bra039461.1EnsemblPlants:Bra039461.1-PEnsemblPlantsGene:Bra039461InterPro:DUF3444ncoils:CoilPANTHER:PTHR10825
PANTHER:PTHR10825:SF4PFAM:PF11926SEG:segUniParc:UPI0002547496UniProt:M4FEE0MapMan:35.2
Description
AT3G04960 (E=2e-066) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27980.1); Has 17810 Blast hits to 12112 proteins in 728 species: Archae - 198; Bacteria - 1231; Metazoa - 8565; Fungi - 1136; Plants - 665; Viruses - 38; Other Eukaryotes - 5977 (source: NCBI BLink).
Coordinates
chrA05:+:23448526..23450341
Molecular Weight (calculated)
61701.6 Da
IEP (calculated)
5.483
GRAVY (calculated)
-0.847
Length
533 amino acids
Sequence
(BLAST)
001: MEADSSNLSR EVTPEQDPAP ATERDEHQTR KRIRGSDSMV TEGASSGGLH QLLDQLQVIS SPVLQFTDKW REIHEEYATL QSSLKKQAVR LDLKEKSLME
101: KVVELEKKEE MLKDVEERER KIGLLENSLE KKAKDNDERS GELDKAVNEF ELKRKEWIKQ LEDREKDLRL LDDAIKEKVS DLEKKHERFE AEQIVKAEEI
201: ELKRKEMLAE VEKKEMIFEV EMKAKAEEME LKRREMLAEV EKKERIFEVE VKAKAEEMKV KEKQLEEKEK ELDLKHRELE QVMDKLKERE KETNSACLAS
301: ASALSPQQRD KACEEEEPER IKIVDSEFHD FKNTMSSFSV DKIWALYDPQ DEMPRLYAKI KRINKSRLSL DVTWLDPKDD ESVPIACGRF THGRRETVSY
401: LTFSHELKPI IHGRNISVNP KKGETWALFK NLGQQHKPPY RYDLVEVVVG FKDRQGVGVA YLGKVEGFVS VFKHSAKDRV VKRVIAPDEM QRFSHRVPSV
501: RLSGDEKEGV PAGSFELDPA AVPSYILLGG EGA
Best Arabidopsis Sequence Match ( AT3G04960.3 )
(BLAST)
001: MLSTERTKFR SMEPATSSPL PRDTSEQDPA LAQSEDQSQG RLRVSAYDLM VVDSDLEGLD QRKEEMRNIF DDIQDKASLI LQFSLKWEEI DDRFGFLKQR
101: AMEKEVSVRN QILELEKKEE RLRLVEERER KIEASFSTLQ EKGNESDLIL LMEANVMRLV LQMQFEQVVV AQLNAQENFL GSLHDSMMKK HEELMTELEA
201: RKNEVALISK TIDAKTCDLD MKVKDFDLKQ TTESERMRKE TELMETSLKQ LEARENELRL LNETIQGKSM ELEKKEVNFQ LKHEAAARET EVKNKFLELK
301: EKKLEEREQH LELKQRKKEK PAIRAETRKR SRLEYESPLS AEKGRYAETL IRPGKKQVQK REAHEIIYID EDEPFNCPDP DFHDFNNTMS SFAVGQVWAL
401: YDPVDDMPRY YAEIRKVLQP QLSLRVTWLE SLQTTEEPIP ACGRFEHGKS ETSSHLMFSH EMYHTIRGQY VTINPRKGET WALFGDWTKT WKSHSEQQKT
501: PYSYDFVEVV TEFDSDRGIG VAYLGRVEGF TSVYERAAQN GLVEIMISCD EMLRFSHRVP SFKMTGDEKE GVPAGSFELD PAAVPRVYLK DAKVKEEKME
601: PIVLV
Arabidopsis Description
Trichohyalin, putative (DUF3444) [Source:UniProtKB/TrEMBL;Acc:F4J631]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.