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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • golgi 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, golgi, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:nucleus
Plant-mPloc:golgi, nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d019461_P002 Maize cytosol 83.79 85.66
TraesCS1D01G042900.1 Wheat nucleus 57.06 54.61
TraesCS1B01G054900.1 Wheat nucleus 56.7 54.28
TraesCS1A01G042500.1 Wheat nucleus 56.53 54.2
HORVU1Hr1G008940.2 Barley nucleus 56.79 54.09
GSMUA_Achr11P... Banana nucleus 27.78 48.47
PGSC0003DMT400057888 Potato cytosol 7.54 43.43
GSMUA_Achr2P02410_001 Banana cytosol 28.31 41.73
PGSC0003DMT400089411 Potato cytosol 7.71 39.29
VIT_05s0020g02050.t01 Wine grape nucleus 28.22 38.56
CDY13919 Canola nucleus 15.86 38.35
GSMUA_Achr5P00460_001 Banana cytosol 23.93 37.55
CDX74107 Canola cytosol 8.76 37.31
CDX88917 Canola nucleus 10.52 36.14
Bra039476.1-P Field mustard cytosol 6.4 35.44
Bra001194.1-P Field mustard cytosol 6.22 35.15
KRH50936 Soybean nucleus 29.45 35.07
KRH11282 Soybean nucleus 29.62 34.92
EES00793 Sorghum cytosol 29.71 34.7
CDX74108 Canola cytosol 6.13 34.65
KRH21004 Soybean nucleus 29.27 34.5
CDX92582 Canola nucleus 25.33 34.32
KXG28768 Sorghum nucleus 29.1 34.05
EER88793 Sorghum cytosol 28.13 33.86
Solyc01g067780.1.1 Tomato cytosol 26.47 33.44
OQU79981 Sorghum cytosol 9.29 33.44
KRH34003 Soybean cytosol 8.5 33.33
PGSC0003DMT400058792 Potato nucleus 26.73 33.26
Solyc01g067770.1.1 Tomato extracellular, vacuole 7.89 32.97
CDY08056 Canola nucleus 17.88 32.48
KRH34004 Soybean cytosol 9.03 32.39
KXG32106 Sorghum cytosol 28.66 32.34
OQU83710 Sorghum cytosol 27.52 32.24
PGSC0003DMT400038431 Potato nucleus 22.09 32.02
Solyc08g029220.1.1 Tomato nucleus 22.09 31.94
KRG92798 Soybean cytosol 19.72 31.73
KRH02180 Soybean cytosol, nucleus, plastid 29.01 31.7
CDY24701 Canola nucleus 16.3 31.58
Solyc01g098250.2.1 Tomato nucleus 27.43 31.52
PGSC0003DMT400058788 Potato nucleus 13.41 31.29
EES09993 Sorghum nucleus 30.24 31.28
CDX88918 Canola cytosol 14.46 31.02
CDX70837 Canola mitochondrion 13.67 30.95
Bra006478.1-P Field mustard nucleus 14.37 30.83
VIT_14s0030g00640.t01 Wine grape nucleus 31.55 30.8
CDX70843 Canola extracellular, golgi 14.55 30.68
Bra006479.1-P Field mustard cytosol 14.72 30.43
Bra002183.1-P Field mustard nucleus 15.07 30.28
CDY13918 Canola nucleus 15.07 30.02
Solyc10g007630.1.1 Tomato cytosol 12.71 29.84
KRG96896 Soybean cytosol 27.43 29.58
PGSC0003DMT400057904 Potato nucleus 27.96 29.51
KRH68628 Soybean cytosol 27.34 29.24
Bra020757.1-P Field mustard nucleus 16.65 29.1
OQU83709 Sorghum cytosol 29.54 29.0
Bra009972.1-P Field mustard nucleus 15.95 28.93
CDX86172 Canola nucleus 15.95 28.93
CDX80667 Canola nucleus 16.74 28.72
CDY05255 Canola nucleus 16.65 28.7
PGSC0003DMT400057894 Potato cytosol 9.73 28.61
PGSC0003DMT400054841 Potato cytosol 12.36 28.54
CDX99992 Canola cytosol 23.49 28.48
EES08665 Sorghum nucleus 16.91 28.42
PGSC0003DMT400094016 Potato nucleus 7.27 28.33
CDX92586 Canola nucleus 8.68 28.29
CDY19714 Canola nucleus 23.75 28.17
Bra006476.1-P Field mustard nucleus 14.29 27.72
CDX88920 Canola nucleus 14.29 27.72
PGSC0003DMT400086601 Potato cytosol 4.82 27.36
CDX70840 Canola nucleus 13.94 27.23
Solyc01g098310.1.1 Tomato cytosol 10.87 27.19
Solyc01g098340.2.1 Tomato cytosol 18.93 27.0
PGSC0003DMT400057893 Potato cytosol 11.22 26.45
PGSC0003DMT400057887 Potato cytosol 19.46 26.37
Bra006473.1-P Field mustard plastid 16.04 26.03
EES10633 Sorghum cytosol 16.74 25.99
OQU85000 Sorghum cytosol 16.56 25.96
EES07899 Sorghum cytosol 16.65 25.85
CDX88924 Canola plastid 15.86 25.6
CDY27809 Canola nucleus 22.0 25.3
EES10933 Sorghum cytosol 15.86 25.0
OQU83714 Sorghum cytosol, nucleus, plastid 21.91 23.67
EES11310 Sorghum cytosol, plastid 10.17 23.58
KXG34037 Sorghum cytosol 15.78 23.5
Solyc01g098330.1.1 Tomato nucleus 8.33 23.17
KXG32108 Sorghum cytosol 12.09 22.89
Bra024236.1-P Field mustard nucleus 7.36 22.83
KXG19130 Sorghum cytosol 10.08 22.73
KXG34016 Sorghum nucleus 16.13 22.2
CDY27796 Canola cytosol 10.25 22.12
Bra039477.1-P Field mustard plastid 10.34 21.93
CDY41919 Canola nucleus, plastid 22.79 21.83
CDX92856 Canola nucleus 8.94 21.7
CDY41935 Canola cytosol 10.08 21.62
Bra039461.1-P Field mustard cytosol 9.9 21.2
CDY29872 Canola cytosol 8.06 20.63
KXG37199 Sorghum cytosol 4.91 20.44
CDY27811 Canola nucleus 7.27 17.33
CDY13917 Canola endoplasmic reticulum, extracellular, mitochondrion 6.13 16.79
Bra002182.1-P Field mustard nucleus 15.07 15.85
CDX70844 Canola mitochondrion, plasma membrane 11.74 15.69
Bra039474.1-P Field mustard nucleus 17.62 13.17
Bra006477.1-P Field mustard cytosol 15.86 13.16
CDX70841 Canola nucleus 15.25 12.02
CDY41917 Canola nucleus 9.82 11.72
CDX88919 Canola cytosol 15.51 11.2
Protein Annotations
Gene3D:1.10.287.110MapMan:35.2EntrezGene:8057912UniProt:C5X4A9InterPro:DUF3444InterPro:DnaJ_domain
EnsemblPlants:EER98396ProteinID:EER98396ProteinID:EER98396.1GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005829InterPro:IPR001623InterPro:IPR036869InterPro:J_dom_sfPFAM:PF00226
PFAM:PF11926PRINTS:PR00625PFscan:PS50076SMART:SM00271EnsemblPlantsGene:SORBI_3002G113400SUPFAM:SSF46565
UniParc:UPI0001A84023RefSeq:XP_002461875.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr2:-:13818951..13825859
Molecular Weight (calculated)
127846.0 Da
IEP (calculated)
6.959
GRAVY (calculated)
-0.680
Length
1141 amino acids
Sequence
(BLAST)
0001: MECNKEEASR AKDLAVVKLQ EADYAGAKRI ALKAQKLFPG LENISQLLTV CEVHICAAVK INGETDWYGI LQVETTADDM LLKKQYRKLA LLLHPDKNKF
0101: VGAEAAFKLI GEAHMILTDK VNRSRHDSKR NSFIPKSAPK KRGRPSNKTD YVAKRANKEN TDAGHSTFWT ICLTCGTKYQ YPYSLLMKVL WCQICSKGFL
0201: AYDLSKKPSV GVEASNPWSG FRMQHQMFPP NQWTHFANQQ HNYQSVPTQQ NPITGHQAPV PNQQQPQNVS GQQTPDINQQ QRSQKFPFSS EPKNVVNSHP
0301: RGGSGMQQEM CPPNEPTHVS DQKLYYQRAP GQQNPVNGNQ TPVTDHQQQS LKVGDKNTSV TTQQQSTKPP FSSGSKNVVS SQGADFLNNN ATANSNLTAE
0401: AGACSREKIT KKPSFSVENG EDRTKSPAES SDKVHLVNEQ MKGNEVATGS SHAINGSQVA TKDVLTATSA DKTLGQHPCT ARQQRNNVIV EDGSDGCGKV
0501: SDHLPDSPGK KRIRKEHSSY TGGKSDHTTE NEVAEANSQH KYSIPSKEKM TNQKEEMISG LNDNVLQGTK RKQQSTSSGI GSDAAARSVN NSCPSNATVS
0601: CPDSDFYDFE KNRDADRFTV DQIWAIYDDL DGMPRYYARI KQVYSPNFML QYTWLEHDPL CDAEKEWSSK ELPVACGNFR LGTTLLTEDI KMFSHVVSWT
0701: KGRKRNRYEI YPKKGEVWAL FRGWDIKWSS DSDDHRHYDY DIVEITSDFA TGLGTYVVPL VKIKGFVSLF VRSSIEAPFL IPSGNTLSFS HSIPFHRLAE
0801: TERKHIPNGA LELDTASLPS DLDKAFTPVN LDSSFMSTGD GNTTCNVSST RSCKVPVGKT EQSQDGTGTD VKDEVEKLNQ NTKIEQDNGS EASVIDHCGD
0901: GWNDSSPPES PTSFCYPDTE FCNFTSFRSF DKFKKGQVWA LYCDTDKFPK YYGLIKSVDS EDCRIRIKWL EHCPCEQVEK RLAQDGLSIG CGIFEVSRQS
1001: EIYDCTEVFS HNMEVMLTGK GKKYEILPCT GQVWAIYKDW SSAWSFEDYS RCEYFLVEVM EISNVNITVS CLTKVDGFST VFMPEQKGES RSSMRIARSD
1101: LIMFSHQVPA FRLTNENDYL CGYWELDPAS LPEVLLVRKT K
Best Arabidopsis Sequence Match ( AT5G18750.1 )
(BLAST)
001: MSNKDEALRA KDLAEDWMSK SDFTTARRIA IKAQKMDATL ESVVARMIMV CDVHCAALEK SGDETDWYKI LQVEQTADEN TIKKQYKKLA LHLHPDKNKL
101: PGAESAFKTI GEAQRVLLDK DKRRFHDMRR KPVFRRPAPA PAPAPSFQPP QQAPTTPFFT QRGFQTNVNV ARKRPENQKK PQAQPTGFDG LASFTTSCAF
201: CHRKYEYQRK LINTLMTCLN CGKQYVAFQE TFQPPVQPTF SFFQQSKVPT QEAGKAVEKQ PESCAKSFFS KEGSRAKSSG VSAENINGKR KRKKVVESSD
301: SSCSESSIDC NEVPAGGQDS GSSGAQHSRR SVRSKQQVSY KEDKEEDAES AEESDFRKKS HEDQPFTETL PNGLNRTKKS KAAKNSSSGS ASDAEIQCTD
401: PDFSNFEKSR EVTCFKAGQT WAIYDDMGGM PRYYAIIRKV IRKPSFMLKI QWLEAEPDDE KANLWVRKNL PISIGKFKLG GNENIEKTPC FSHMIYFKVG
501: SMKDTVRVYP RIGETWALFK NWDINWSSGR RRSSHEHEYE YEFVEILSEY VEGVAIQVAF LRKIKGFTSV FCRIAPGGGS DTIQIPPHEL LRFSHSIPST
601: KLTGKEGNGV PIGSYEFDTA ALPQKIEQEE AVPVLRESAK LNQVNHNSPP SSEPDCIVIP NFQFNNFSAE RLEGKFAPGQ IWSLNSKEDG LPKCYAKIQQ
701: IVWRPVFKLQ INRLEPKSLL ENVIQWHDKR MPVSCGNFTL KEGRDETLTK VTDFSHQIKA EKHFRINEYI VVPKTGEIWA MYKNWSETIK ATSLKRCEYE
801: VVEVLDDNDS HIEVMLLEQV DGFISVFKEK LEGGIDVKKK IPRCELLRFS HYVPAFRLTG ERDGALRGYV ELDPSAFPLN LRRS
Arabidopsis Description
DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q3E9D9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.