CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88924	Canola	plastid	86.9	61.95
CDX88917	Canola	nucleus	37.7	57.23
CDX88918	Canola	cytosol	58.53	55.45
CDX70843	Canola	extracellular, golgi	56.94	53.05
CDY13918	Canola	nucleus	54.37	47.82
PGSC0003DMT400057888	Potato	cytosol	17.66	44.95
AT5G18740.1	Thale cress	nucleus	36.31	42.56
CDX74108	Canola	cytosol	15.67	39.11
PGSC0003DMT400089411	Potato	cytosol	17.26	38.84
CDX92583	Canola	mitochondrion, plastid	25.79	37.46
CDX88920	Canola	nucleus	43.25	37.07
CDX70840	Canola	nucleus	42.66	36.82
CDX92586	Canola	nucleus	23.61	34.0
CDX70841	Canola	nucleus	74.4	25.92
CDX70844	Canola	mitochondrion, plasma membrane	41.07	24.24
CDX88919	Canola	cytosol	75.79	24.16
PGSC0003DMT400057894	Potato	cytosol	18.45	23.97
CDY13917	Canola	endoplasmic reticulum, extracellular, mitochondrion	19.44	23.5
CDX92582	Canola	nucleus	37.5	22.45
TraesCS4A01G214500.1	Wheat	nucleus	28.77	21.64
PGSC0003DMT400057893	Potato	cytosol	20.63	21.49
Solyc01g098340.2.1	Tomato	cytosol	33.93	21.38
Os11t0574200-00	Rice	cytosol	13.69	21.1
CDY13919	Canola	nucleus	19.25	20.55
PGSC0003DMT400057887	Potato	cytosol	34.33	20.55
GSMUA_Achr5P00460_001	Banana	cytosol	28.37	19.67
GSMUA_Achr11P...	Banana	nucleus	25.2	19.42
Solyc01g098310.1.1	Tomato	cytosol	17.46	19.3
Solyc01g098330.1.1	Tomato	nucleus	15.67	19.27
Solyc10g007630.1.1	Tomato	cytosol	18.45	19.14
GSMUA_Achr2P02410_001	Banana	cytosol	28.97	18.86
PGSC0003DMT400054841	Potato	cytosol	18.06	18.42
HORVU2Hr1G084660.1	Barley	cytosol	30.95	17.93
Solyc01g098250.2.1	Tomato	nucleus	34.13	17.32
Zm00001d040846_P001	Maize	cytosol	31.15	16.77
TraesCS2A01G347700.1	Wheat	mitochondrion	30.36	16.65
HORVU2Hr1G013270.2	Barley	cytosol	28.57	16.57
TraesCS4B01G101500.1	Wheat	cytosol	29.37	16.52
CDY27811	Canola	nucleus	15.67	16.49
TraesCS2B01G366100.1	Wheat	cytosol	29.96	16.43
PGSC0003DMT400057904	Potato	nucleus	35.12	16.37
CDY29872	Canola	cytosol	14.48	16.37
TraesCS2D01G077700.1	Wheat	cytosol	27.98	16.34
Zm00001d052947_P001	Maize	plastid	27.98	16.3
EES00793	Sorghum	cytosol	31.35	16.17
CDY51818	Canola	nucleus	12.7	16.16
TraesCS2B01G095100.1	Wheat	cytosol	27.58	16.09
EER88793	Sorghum	cytosol	30.16	16.03
KRH68628	Soybean	cytosol	33.93	16.03
KRG96896	Soybean	cytosol	33.53	15.97
Os01t0375100-01	Rice	nucleus	31.55	15.77
CDX92856	Canola	nucleus	14.68	15.74
KRG92798	Soybean	cytosol	22.02	15.66
CDY24701	Canola	nucleus	18.25	15.62
CDY05255	Canola	nucleus	20.04	15.26
CDY60893	Canola	cytosol	4.76	15.09
CDY60894	Canola	cytosol	4.76	15.09
CDX99992	Canola	cytosol	28.17	15.09
KXG28768	Sorghum	nucleus	29.17	15.08
CDY41935	Canola	cytosol	15.87	15.04
CDY08056	Canola	nucleus	18.65	14.97
OQU83710	Sorghum	cytosol	28.77	14.89
CDY19714	Canola	nucleus	28.37	14.86
Os11t0578100-00	Rice	cytosol	30.95	14.81
TraesCS3A01G213800.3	Wheat	nucleus	29.96	14.76
CDY27796	Canola	cytosol	15.48	14.74
TraesCS6A01G167100.1	Wheat	cytosol	28.37	14.65
TraesCS6B01G194500.1	Wheat	cytosol	28.17	14.55
HORVU4Hr1G043860.4	Barley	cytosol	27.38	14.54
Os06t0535300-01	Rice	nucleus	29.37	14.54
Zm00001d008412_P001	Maize	cytosol	29.37	14.52
HORVU6Hr1G033850.1	Barley	cytosol	27.98	14.46
TraesCS3D01G215900.1	Wheat	nucleus	29.37	14.45
TraesCS3B01G244000.4	Wheat	nucleus	29.56	14.41
TraesCS6D01G155600.1	Wheat	cytosol	27.78	14.34
TraesCS2A01G084900.1	Wheat	nucleus	29.37	14.31
KXG32106	Sorghum	cytosol	28.57	14.24
Zm00001d008413_P001	Maize	cytosol	28.57	14.15
CDX86172	Canola	nucleus	17.46	13.99
CDY27809	Canola	nucleus	27.18	13.81
HORVU7Hr1G050080.1	Barley	nucleus	28.17	13.73
CDX80667	Canola	nucleus	18.06	13.68
EER98396	Sorghum	nucleus	30.95	13.67
HORVU3Hr1G051850.2	Barley	nucleus	30.56	13.62
CDX76994	Canola	nucleus	15.67	13.57
CDY40464	Canola	nucleus	12.9	13.54
TraesCS2B01G099600.2	Wheat	nucleus	29.37	13.49
Zm00001d019461_P002	Maize	cytosol	29.76	13.44
TraesCS2D01G082800.1	Wheat	nucleus	29.17	13.38
PGSC0003DMT400038431	Potato	nucleus	20.83	13.34
OQU83714	Sorghum	cytosol, nucleus, plastid	27.78	13.26
TraesCS2D01G078000.1	Wheat	cytosol	16.87	13.22
Solyc08g029220.1.1	Tomato	nucleus	20.63	13.18
TraesCS2A01G080400.1	Wheat	cytosol	21.03	13.17
CDY32121	Canola	nucleus	12.1	13.12
CDY47298	Canola	cytosol	15.08	13.01
TraesCS1B01G054900.1	Wheat	nucleus	30.75	13.0
CDX74632	Canola	cytosol	15.08	12.95
TraesCS1D01G042900.1	Wheat	nucleus	30.56	12.92
TraesCS1A01G042500.1	Wheat	nucleus	30.16	12.77
EES09993	Sorghum	nucleus	27.58	12.6
HORVU1Hr1G008940.2	Barley	nucleus	29.76	12.52
CDY35353	Canola	cytosol	15.48	12.52
OQU83709	Sorghum	cytosol	28.17	12.22
CDY11521	Canola	nucleus	13.89	11.82
CDY49460	Canola	nucleus	15.28	11.81
CDY41919	Canola	nucleus, plastid	26.98	11.42
CDX93081	Canola	nucleus	15.67	11.4
CDX76752	Canola	nucleus	13.89	11.31
CDY15046	Canola	nucleus	15.48	11.3
CDY19683	Canola	cytosol	15.28	11.11
EES08665	Sorghum	nucleus	14.68	10.9
Os11t0573800-00	Rice	nucleus	16.47	9.04
CDY41917	Canola	nucleus	15.28	8.05
TraesCS2D01G077900.1	Wheat	cytosol	8.13	7.59
CDY34931	Canola	cytosol	3.37	7.56
CDX74082	Canola	cytosol	2.98	6.64
CDY60010	Canola	cytosol, mitochondrion, nucleus	2.78	6.36
CDY12569	Canola	cytosol	2.78	3.91
CDX92584	Canola	mitochondrion	2.58	3.72
CDX99362	Canola	nucleus	1.79	3.16
CDY08035	Canola	cytosol	0.6	3.03
CDX78941	Canola	nucleus	2.78	2.54
CDX76474	Canola	cytosol	0.99	2.08
CDY12382	Canola	nucleus	1.39	1.91
CDY27107	Canola	nucleus	1.39	1.91
CDY60890	Canola	cytosol	0.79	1.65
CDX74107	Canola	cytosol	0.79	1.49
KRH34003	Soybean	cytosol	0.4	0.69
CDX99361	Canola	cytosol	0.2	0.68
CDY60891	Canola	cytosol, mitochondrion, nucleus	0.2	0.57
CDX76475	Canola	cytosol	0.2	0.49
CDX78942	Canola	cytosol	0.2	0.33
CDX99360	Canola	cytosol	0.2	0.3
CDX76473	Canola	cytosol	0.0	0.0
CDX76476	Canola	cytosol	0.0	0.0
CDY09330	Canola	cytosol	0.0	0.0
CDY31307	Canola	cytosol	0.0	0.0
KRH34004	Soybean	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX70837	EnsemblPlantsGene:GSBRNA2T00140730001	InterPro:DUF3444	PANTHER:PTHR45089	PFAM:PF11926	ProteinID:CDX70837
ProteinID:CDX70837.1	UniParc:UPI0004EEBE11	MapMan:35.2	:	:	:

Description

BnaC03g09210D

Coordinates

chrLK031791:-:2311116..2313381

Molecular Weight (calculated)

58056.3 Da

IEP (calculated)

6.678

GRAVY (calculated)

-0.342

Length

504 amino acids

Sequence
(BLAST)

001: MLLQRRRNIR RCALRHRPLL RQRGDVQPKI AGLKFNDFDK LREEVNFAVG QVWAIYDTTD KVPRQYALIR KVSVPSFGLR ITYLEPDPDD EKEIQWFEED
101: LPVSTSQFRL GKNENTQERS LFSHVIHCNE GSNSGHITLS PRKGETWALF KNWDMNWSSE PDSHRKYEYE FVEILSDYYC TEAAGVSVAF LHKAKCFASV
201: FFRMGTGDAE TLHISPHSLY RFSHRIPSFK LTGVDVKGLP KYAYELDQAA LPATIEEVTV PSHLLPEFAP PKPEALCFPI NGKVFKTGQI WSYIGCNDNM
301: PRDYCRIHKI SVTQTFEQAP VYKIVSFRLK PKRLPGEVII PWEDKKLHVS CGTFLVTRVH VALAPNNFSH LMVPQTSMEG NEYTYTILPK VGQVWAIYRF
401: WNGFLEETYE DYVIVEVLDD ALDYKVLALE PALQFNGDEE RKRVFGAAES RPRDFDDGDE VIFTIPKLKV LRFSHQIAAS RVIKEVDGEL KELFELDSTA
501: VSVL

Best Arabidopsis Sequence Match ( AT5G18730.1 )
(BLAST)

001: MNAQVGVAMG ISQNLEADNN SFLCDSGSAG AVPQKISGCA GLKFNDFDRL REGVKFEAGQ TWAIYNNTVD QMPRLYAQIR KVSAPCFSLR ITYLEPDPDG
101: EKETQWFEED LPVSVGKFRL GENKSTQDRS IFSHVIHCNE RSNTSCFSIT CRFIDTCHFS VSPRKGETWA LFKNWDIKWS SELDSHRKYE YEFVEILSDY
201: ADEAGVYVAY LHKAKGFASV FFRMGTGYEG IFRILPRSLY RFSHRVPSFK LTGDEGNGVA KDAYELDEAA LPETIEEFIM PSNSESETKS EHQAIYFASE
301: GKVFQTGQIW SFHSGYDDLP LYYGRIQKIT FTQAFKQDPV IKLHISRLKA TRFPEDVINW KYGGMPVGCG TFYARKVQEI ITPSEVSHQI MPQTSMDGIE
401: YTILPKIGEV WAIYRYWSRY IDVDRLEFGL YDIVEILDDT LDYKVQLLTQ QPVSDDRNDM EHRLFRACTE YTSNEDDGSE PIFTIPKTER IRFSNKVPAT
501: RVTKEMYGEL EDNSKVEFRA TPINVIHC

Arabidopsis Description

CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT5G18740.1); Has 30201 Blast hits to 17322 proteins in 780 /.../es: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G18730]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.