CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71036
CDX75589
CDX80174
CDX88754
CDY24773
CDY31552
CDY35472
CDY67096

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G05230.1	CDX75589	AT4G36690.1	21798944
AT2G05230.1	CDY24773	AT4G36690.1	21798944
AT2G05230.1	CDY35472	AT4G36690.1	21798944
AT2G05230.1	CDY67096	AT4G36690.1	21798944
AT2G05230.1	CDX71036	AT5G60340.1	21798944
AT2G05230.1	CDX80174	AT5G60340.1	21798944
AT2G05230.1	CDX88754	AT5G60340.1	21798944
AT2G05230.1	CDY31552	AT5G60340.1	21798944
AT2G05250.1	CDX75589	AT4G36690.1	21798944
AT2G05250.1	CDY24773	AT4G36690.1	21798944
AT2G05250.1	CDY35472	AT4G36690.1	21798944
AT2G05250.1	CDY67096	AT4G36690.1	21798944
AT2G05250.1	CDX71036	AT5G60340.1	21798944
AT2G05250.1	CDX80174	AT5G60340.1	21798944
AT2G05250.1	CDX88754	AT5G60340.1	21798944
AT2G05250.1	CDY31552	AT5G60340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013179.1-P	Field mustard	nucleus	100.0	100.0
CDY15046	Canola	nucleus	97.4	97.83
AT2G05230.1	Thale cress	cytosol	83.69	82.15
AT2G05250.1	Thale cress	cytosol	83.69	82.15
CDY47298	Canola	cytosol	57.43	68.15
CDX74632	Canola	cytosol	57.58	67.97
VIT_12s0057g00710.t01	Wine grape	cytosol	50.79	50.72
KRH73997	Soybean	nucleus	51.08	50.21
KRH14137	Soybean	nucleus	50.79	49.79
CDX76476	Canola	cytosol	6.35	43.14
Solyc07g047690.1.1	Tomato	nucleus	48.48	42.64
Solyc05g040050.1.1	Tomato	nucleus	46.75	41.38
CDY31307	Canola	cytosol	5.19	39.13
CDY60891	Canola	cytosol, mitochondrion, nucleus	9.67	38.51
CDX99361	Canola	cytosol	7.79	36.99
GSMUA_Achr8P00660_001	Banana	cytosol	31.6	36.38
CDX76475	Canola	cytosol	10.53	35.44
CDX76994	Canola	nucleus	29.29	34.88
CDY35353	Canola	cytosol	30.59	34.03
GSMUA_Achr2P21160_001	Banana	cytosol	25.25	32.53
CDY11521	Canola	nucleus	27.71	32.43
CDY49460	Canola	nucleus	30.45	32.36
TraesCS3A01G536400.1	Wheat	cytosol	34.63	32.34
Os02t0510000-01	Rice	cytosol	34.05	32.15
CDX76474	Canola	cytosol	11.11	32.08
CDY60893	Canola	cytosol	7.36	32.08
CDY60894	Canola	cytosol	7.36	32.08
TraesCS3B01G607500.1	Wheat	cytosol	34.34	32.08
Zm00001d003948_P001	Maize	cytosol	34.05	32.07
EES10633	Sorghum	cytosol	33.91	31.97
TraesCS3D01G541800.1	Wheat	cytosol	34.34	31.9
OQU85000	Sorghum	cytosol	33.48	31.87
PGSC0003DMT400092645	Potato	cytosol	5.92	31.78
GSMUA_Achr11P...	Banana	cytosol	22.94	31.67
CDX76752	Canola	nucleus	28.28	31.66
TraesCS2A01G284200.2	Wheat	cytosol	33.48	31.65
TraesCS2D01G283100.2	Wheat	cytosol	33.48	31.65
CDY19683	Canola	cytosol	31.6	31.6
GSMUA_Achr3P02570_001	Banana	nucleus	23.81	31.55
GSMUA_Achr6P12230_001	Banana	nucleus	26.26	31.38
Zm00001d025238_P001	Maize	cytosol	33.19	31.34
TraesCS2B01G301100.1	Wheat	cytosol	31.75	31.16
CDY09330	Canola	cytosol	10.1	31.11
CDY60890	Canola	cytosol	10.82	30.99
HORVU1Hr1G001860.1	Barley	nucleus	19.62	30.91
CDX99362	Canola	nucleus	12.7	30.88
GSMUA_Achr10P...	Banana	cytosol	27.13	30.67
EES07899	Sorghum	cytosol	32.47	30.61
CDX76473	Canola	cytosol	10.68	30.58
EES10933	Sorghum	cytosol	31.89	30.52
Zm00001d025584_P001	Maize	cytosol	32.18	30.42
Zm00001d025585_P001	Maize	cytosol	32.18	30.42
Os03t0401200-01	Rice	cytosol	32.61	30.21
TraesCS5A01G493100.1	Wheat	cytosol	32.9	29.96
Zm00001d050565_P001	Maize	cytosol	27.27	29.35
TraesCS4D01G315600.1	Wheat	cytosol	32.18	29.3
CDY27107	Canola	nucleus	15.44	29.23
CDY60010	Canola	cytosol, mitochondrion, nucleus	9.24	29.09
CDX78942	Canola	cytosol	12.84	29.09
CDX74108	Canola	cytosol	8.23	28.22
CDY12569	Canola	cytosol	14.57	28.21
CDY12382	Canola	nucleus	14.86	28.14
Os04t0388800-01	Rice	nucleus	24.24	28.09
TraesCS4B01G319100.1	Wheat	cytosol	28.86	28.09
CDY08035	Canola	cytosol	3.9	27.27
TraesCS3B01G470100.1	Wheat	nucleus	28.28	27.0
CDY32121	Canola	nucleus	17.6	26.24
CDY40464	Canola	nucleus	18.04	26.04
Os01t0923800-01	Rice	nucleus	27.85	25.94
CDX74107	Canola	cytosol	9.96	25.75
CDX88917	Canola	nucleus	12.12	25.3
CDX99360	Canola	cytosol	12.12	25.23
TraesCS3A01G435100.1	Wheat	nucleus	28.43	24.91
KXG34016	Sorghum	nucleus	29.15	24.37
Zm00001d011997_P001	Maize	nucleus	28.86	24.33
CDY24701	Canola	nucleus	20.49	24.11
CDY08056	Canola	nucleus	21.5	23.73
CDY34931	Canola	cytosol	7.65	23.56
CDY05255	Canola	nucleus	22.08	23.11
CDX74082	Canola	cytosol	7.5	23.01
CDY13919	Canola	nucleus	15.01	22.03
CDX92586	Canola	nucleus	10.68	21.14
CDX86172	Canola	nucleus	19.05	20.99
CDY27796	Canola	cytosol	15.58	20.42
CDY41935	Canola	cytosol	15.58	20.3
CDX80667	Canola	nucleus	19.34	20.15
CDY51818	Canola	nucleus	11.26	19.7
CDX78941	Canola	nucleus	15.44	19.38
CDX92582	Canola	nucleus	21.07	17.34
CDX99992	Canola	cytosol	22.94	16.9
CDX92856	Canola	nucleus	11.11	16.38
CDY27811	Canola	nucleus	11.11	16.08
CDY19714	Canola	nucleus	22.08	15.9
CDY13918	Canola	nucleus	13.13	15.88
CDX70837	Canola	mitochondrion	11.4	15.67
CDX70843	Canola	extracellular, golgi	11.98	15.34
CDX88918	Canola	cytosol	11.69	15.23
CDY29872	Canola	cytosol	9.67	15.02
CDY27809	Canola	nucleus	21.36	14.92
CDX70840	Canola	nucleus	11.26	13.36
CDX88924	Canola	plastid	13.13	12.87
CDX88920	Canola	nucleus	10.68	12.59
CDY41919	Canola	nucleus, plastid	21.36	12.43
CDY13917	Canola	endoplasmic reticulum, extracellular, mitochondrion	7.22	11.99
CDX70844	Canola	mitochondrion, plasma membrane	13.13	10.66
CDY41917	Canola	nucleus	13.13	9.52
CDX70841	Canola	nucleus	13.56	6.5
CDX88919	Canola	cytosol	14.43	6.33
CDX92583	Canola	mitochondrion, plastid	2.45	4.9
CDX92584	Canola	mitochondrion	0.58	1.15

Protein Annotations

EnsemblPlants:CDX93081	EnsemblPlantsGene:GSBRNA2T00154990001	Gene3D:1.10.287.110	InterPro:DUF3444	InterPro:DnaJ_domain	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44137	PANTHER:PTHR44137:SF2	PFAM:PF00226	PFAM:PF11926
PFscan:PS50076	PRINTS:PR00625	ProteinID:CDX93081	ProteinID:CDX93081.1	SEG:seg	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI000254091C	MapMan:35.2	:	:	:

Description

BnaA03g38030D

Coordinates

chrLK031874:-:1086025..1089492

Molecular Weight (calculated)

77596.4 Da

IEP (calculated)

9.000

GRAVY (calculated)

-0.544

Length

693 amino acids

Sequence
(BLAST)

001: MEAYREEALR VKQVAERRFA EKDFASARSY ALKARSLSPD LEGLAQMIAT FEVYLASQCR SGGGQIDYYA VLGLKPSAGK RDVKKQYKKM AVLLHPDKNK
101: CIGADGAFHL VSEAWKFLSN EFNKSTFYYK RKKHIESSTV VQKHRAEYAP GTAAFDRFPP SSSSERLDTF WTVCTSCKVQ YEYLRKYVNK RLSCKNCRGA
201: FIAVETGPAP VSAPFHYTHP SHAPPPLHSN GYSSHSYDAR MPTNSTYLLG HHYPSQGHGY EYGSYDWSSS YPETASPGNL DLKRVSSVSN GYPYKHSKSV
301: ATTGIINKVK DGSNGTSSVK TKPDGLIYAN PPGLSTHTAA VKVGRPEKKS RVFIEASVNG FVENPLMRSA PVSKTANAEF KLHGQSYGST RRWSAASVLD
401: TRKPLLQKAR ADIKQRLDSI RLASEAAAAA AATAAVEEDT RPVDSCKLGD VTAGRKTSGP ITVPDSDFHD FDKNRSEECF EPRQIWAIYD EDDGMPRLYC
501: VVREVLSLEP FKIDIAYLSS KTDIEFGSMK WVQYGFTKSC GHFRIQNYDV VEQVNIFSHL LRGRKTGRGG CVRIFPKTGD IWAVYKNWSL NWNESTPDEV
601: RHEYEMVEIL DEYTEQYGVC IAPLVKLEGY KTVYHRSGKE DGKKWIPRSE MLRFSHQVPS WFLKGATSGF PGNCWDLDPA AIPEELLHVG AEA

Best Arabidopsis Sequence Match ( AT2G05250.1 )
(BLAST)

001: MEAYREEALR VKQIAERRFA EKDFTSARSY ALKAKSLFPD LEGLSQMVAT FEVYLASQTR SGGQIDYYAV LGLKPSAGKR EVKKQYKKMA VLLHPDKNKC
101: IGADGAFHLI SEAWSFLSNE FNKSTFYYKR KKHIDSTEVQ KHSTEYMPGT GTGTGTAVFD RFPPSSERLD TFWTVCTSCK VQYEYLRKYV NKRLSCKNCR
201: GAFIAVETGP APVSAPFHYT PPSHAPPSHA PPSHAPPSNG YGAHGYDAMS RMPTNSTYFL GHYPGQGHGY DYSTNGSYEW SSYSGTTTSP GNLDLKRVSS
301: VSNGYPYKHS NSVVSGGINK VKDGSNGTCS KKSTPGGLIY PNQISMSAHA SANKVGRPGK KSKVFMEAAA NGFVENPLRS VSVSKTANTD AKMDQDYKLH
401: IQSSTRRWSA ASVLDTRKPL IQKARTDIKQ RLEMMRLALE AAAAAEDATP LDEKTVLSCK LGDVTGRKTN GPITVPDSDF HDFDKNRSEE SFEPRQIWAI
501: YDEDDGMPRL YCVVREVLSV QPFKIDIAYL SSKTDIEFGS MKWVQYGFTK SCGHFRIRNS DIVDHVNIFS HLLKGKKTGR GGCVRIFPTA GEIWAVYKNW
601: SLNWDGSTPD EVRHQYEMVE ILDEYTEQYG VCVTPLVKLE GYKTVYHRST REDSKKWIPR CEMLRFSHQV PSWFLKDATS GFPENCWDLD PAAIPEELLH
701: IGAGTN

Arabidopsis Description

At2g05250/F5G3.15 [Source:UniProtKB/TrEMBL;Acc:Q9S7L6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.