CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
endoplasmic reticulum 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92307
KRH08572
KRH34487
KRH56450
KRH64800
KRH70217

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G05230.1	KRH56450	AT4G36690.1	21798944
AT2G05230.1	KRH64800	AT4G36690.1	21798944
AT2G05230.1	KRG92307	AT5G60340.1	21798944
AT2G05230.1	KRH08572	AT5G60340.1	21798944
AT2G05230.1	KRH34487	AT5G60340.1	21798944
AT2G05230.1	KRH70217	AT5G60340.1	21798944
AT2G05250.1	KRH56450	AT4G36690.1	21798944
AT2G05250.1	KRH64800	AT4G36690.1	21798944
AT2G05250.1	KRG92307	AT5G60340.1	21798944
AT2G05250.1	KRH08572	AT5G60340.1	21798944
AT2G05250.1	KRH34487	AT5G60340.1	21798944
AT2G05250.1	KRH70217	AT5G60340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14137	Soybean	nucleus	96.31	96.04
VIT_12s0057g00710.t01	Wine grape	cytosol	66.95	68.01
PGSC0003DMT400015678	Potato	nucleus	60.0	53.68
Solyc07g047690.1.1	Tomato	nucleus	59.57	53.3
PGSC0003DMT400048481	Potato	cytosol	57.87	52.11
Solyc05g040050.1.1	Tomato	nucleus	57.87	52.11
AT2G05250.1	Thale cress	cytosol	51.91	51.84
AT2G05230.1	Thale cress	cytosol	51.91	51.84
CDX93081	Canola	nucleus	50.21	51.08
Bra013179.1-P	Field mustard	nucleus	50.21	51.08
CDY15046	Canola	nucleus	49.93	51.01
Bra035378.1-P	Field mustard	cytosol	49.08	50.29
CDY47298	Canola	cytosol	41.28	49.83
CDX74632	Canola	cytosol	41.28	49.57
KRG89459	Soybean	cytosol	7.38	47.71
GSMUA_Achr8P00660_001	Banana	cytosol	35.04	41.03
GSMUA_Achr11P...	Banana	cytosol	27.52	38.65
GSMUA_Achr2P21160_001	Banana	cytosol	29.36	38.48
KRH53452	Soybean	cytosol	37.45	38.15
KRH64496	Soybean	nucleus	37.45	38.15
GSMUA_Achr10P...	Banana	cytosol	32.62	37.52
TraesCS3B01G607500.1	Wheat	cytosol	39.29	37.33
TraesCS3A01G536400.1	Wheat	cytosol	39.29	37.33
GSMUA_Achr3P02570_001	Banana	nucleus	27.66	37.28
TraesCS3D01G541800.1	Wheat	cytosol	39.29	37.13
TraesCS2D01G283100.2	Wheat	cytosol	38.44	36.97
TraesCS2A01G284200.2	Wheat	cytosol	38.44	36.97
OQU85000	Sorghum	cytosol	38.01	36.81
EES10633	Sorghum	cytosol	38.16	36.6
HORVU1Hr1G001860.1	Barley	nucleus	22.84	36.59
EES07899	Sorghum	cytosol	38.01	36.46
Os02t0510000-01	Rice	cytosol	37.87	36.38
TraesCS5A01G493100.1	Wheat	cytosol	39.15	36.27
TraesCS2B01G301100.1	Wheat	cytosol	36.31	36.26
GSMUA_Achr6P12230_001	Banana	nucleus	29.79	36.21
Zm00001d003948_P001	Maize	cytosol	37.73	36.14
Zm00001d025238_P001	Maize	cytosol	37.45	35.97
Os03t0401200-01	Rice	cytosol	38.16	35.96
TraesCS4D01G315600.1	Wheat	cytosol	38.58	35.74
EES10933	Sorghum	cytosol	36.6	35.64
Zm00001d025584_P001	Maize	cytosol	36.45	35.06
Zm00001d025585_P001	Maize	cytosol	36.45	35.06
Zm00001d050565_P001	Maize	cytosol	31.63	34.63
KRH09248	Soybean	nucleus	37.59	34.02
KRH18160	Soybean	nucleus	37.02	33.85
KRH16532	Soybean	cytosol	36.31	33.25
KRH38748	Soybean	nucleus	38.16	33.13
TraesCS4B01G319100.1	Wheat	cytosol	33.19	32.87
Os04t0388800-01	Rice	nucleus	27.52	32.44
KRH54176	Soybean	nucleus	35.6	31.65
KRH63773	Soybean	nucleus	36.45	31.61
TraesCS3B01G470100.1	Wheat	nucleus	32.06	31.13
KRH74334	Soybean	cytosol, nucleus	24.26	30.48
KRH39596	Soybean	nucleus	24.82	30.22
Os01t0923800-01	Rice	nucleus	31.63	29.97
TraesCS3A01G435100.1	Wheat	nucleus	33.19	29.58
KXG34016	Sorghum	nucleus	32.2	27.38
Zm00001d011997_P001	Maize	nucleus	31.77	27.25
KRH34004	Soybean	cytosol	11.91	26.42
KRG92798	Soybean	cytosol	25.39	25.25
KRH50796	Soybean	cytosol, nucleus, peroxisome	8.79	24.9
KRH37055	Soybean	cytosol	9.5	24.81
KRH34003	Soybean	cytosol	10.21	24.74
KRH12028	Soybean	cytosol	9.22	24.07
KRH02299	Soybean	cytosol	9.08	23.88
KRH50936	Soybean	nucleus	26.52	19.52
KRH11282	Soybean	nucleus	25.96	18.91
KRH21004	Soybean	nucleus	25.53	18.59
KRH02180	Soybean	cytosol, nucleus, plastid	25.53	17.24
KRG96896	Soybean	cytosol	25.67	17.11
KRH68628	Soybean	cytosol	25.11	16.59

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100792639	MapMan:35.2	EMBL:ACUP02001293	ncoils:Coil	InterPro:DUF3444
InterPro:DnaJ_domain	EnsemblPlantsGene:GLYMA_02G305000	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:K7KBQ7
EnsemblPlants:KRH73997	ProteinID:KRH73997	ProteinID:KRH73997.1	ProteinID:KRH73998.1	PFAM:PF00226	PFAM:PF11926
PRINTS:PR00625	PFscan:PS50076	PANTHER:PTHR44137	PANTHER:PTHR44137:SF2	SMART:SM00271	SUPFAM:SSF46565
UniParc:UPI00023BD248	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:47994943..47998270

Molecular Weight (calculated)

78138.2 Da

IEP (calculated)

8.268

GRAVY (calculated)

-0.516

Length

705 amino acids

Sequence
(BLAST)

001: MEANKEEALK AIEIAEKRFA LRDFAGAKNY AVKAKTLCPG LEGISQMVAT FEVYVASEVK HNGDLDYYSI LGLKPFADKE AVKKQYKKLA VLLHPDKNKC
101: VGADEAFKLV SEAWTWLSDS AMRSSYDLKR NVQLGGANQT NLSPAHATGT AGYTKCSNLP TPCGRLDTFW TICTSCKVQY EYLRKYVNKR LSCKNCRGTF
201: VAVETGAAPA NGSFPYCPWS YVAGNGYGSH SFDGVTYVPT SAPYFNGNGV TGYHSGHGYE YVPNVSFQWG SAGVVNQNGS TTLPADSVHR ANGNVKRGRP
301: KVKLGADKRH HVIETMVNTN SDVPFSCSEP QEDKLSRPDK KQKVVVGASF RNGYEEKGSK CASELIVANG NDSMGHGQKP SCTVEVQTKQ CSMAPAFDAR
401: KLLIEKARKE IRKKLEEMKL SSAAAAAAAL NEKEKSQAEV GKVKRETCRK AAPNVSGLQL ENGKTGPVSI TVPDSDFHDF DKDRSEECFR PKQIWALYDE
501: EDGMPRLYCM IREVVSVNPF KIHISYLSSK TDSEFGSVNW LDSGFTKSCG NFRAFNSDAV DQVNIFSHVL NKEKAGRGGC VRIYPRSGDI WAVYRNWSPD
601: WSRSTPDEVR HQYEMVEVLD DYSEELGVCV SPLIKLAGFK TVYQSNTDKS TIKWIPRREM LRFSHQVPSW LLKGEASNLP ERCWDLDPAA TPDELLHAAT
701: EPNAL

Best Arabidopsis Sequence Match ( AT2G05250.1 )
(BLAST)

001: MEAYREEALR VKQIAERRFA EKDFTSARSY ALKAKSLFPD LEGLSQMVAT FEVYLASQTR SGGQIDYYAV LGLKPSAGKR EVKKQYKKMA VLLHPDKNKC
101: IGADGAFHLI SEAWSFLSNE FNKSTFYYKR KKHIDSTEVQ KHSTEYMPGT GTGTGTAVFD RFPPSSERLD TFWTVCTSCK VQYEYLRKYV NKRLSCKNCR
201: GAFIAVETGP APVSAPFHYT PPSHAPPSHA PPSHAPPSNG YGAHGYDAMS RMPTNSTYFL GHYPGQGHGY DYSTNGSYEW SSYSGTTTSP GNLDLKRVSS
301: VSNGYPYKHS NSVVSGGINK VKDGSNGTCS KKSTPGGLIY PNQISMSAHA SANKVGRPGK KSKVFMEAAA NGFVENPLRS VSVSKTANTD AKMDQDYKLH
401: IQSSTRRWSA ASVLDTRKPL IQKARTDIKQ RLEMMRLALE AAAAAEDATP LDEKTVLSCK LGDVTGRKTN GPITVPDSDF HDFDKNRSEE SFEPRQIWAI
501: YDEDDGMPRL YCVVREVLSV QPFKIDIAYL SSKTDIEFGS MKWVQYGFTK SCGHFRIRNS DIVDHVNIFS HLLKGKKTGR GGCVRIFPTA GEIWAVYKNW
601: SLNWDGSTPD EVRHQYEMVE ILDEYTEQYG VCVTPLVKLE GYKTVYHRST REDSKKWIPR CEMLRFSHQV PSWFLKDATS GFPENCWDLD PAAIPEELLH
701: IGAGTN

Arabidopsis Description

At2g05250/F5G3.15 [Source:UniProtKB/TrEMBL;Acc:Q9S7L6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.