CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 2
cytosol 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89459	Soybean	cytosol	18.18	93.58
KRH39596	Soybean	nucleus	92.51	89.64
VIT_02s0012g02290.t01	Wine grape	nucleus	55.97	53.13
GSMUA_Achr4P05630_001	Banana	cytosol	45.45	50.8
Zm00001d045553_P001	Maize	cytosol	34.94	41.18
CDY32121	Canola	nucleus	33.87	40.86
TraesCS7A01G033400.1	Wheat	plastid	32.26	40.13
Bra017315.1-P	Field mustard	nucleus	34.05	40.04
Os06t0111700-01	Rice	nucleus	34.05	39.96
HORVU7Hr1G005730.1	Barley	cytosol	31.55	39.6
CDY40464	Canola	nucleus	33.87	39.58
EES11310	Sorghum	cytosol, plastid	34.58	39.43
TraesCS4A01G456000.1	Wheat	plastid	31.55	39.25
AT2G35540.1	Thale cress	nucleus	39.93	37.97
Bra005331.1-P	Field mustard	nucleus	35.47	37.9
CDY51818	Canola	nucleus	26.38	37.37
KXG19130	Sorghum	cytosol	32.62	36.17
Solyc08g005300.1.1	Tomato	nucleus	47.59	29.28
PGSC0003DMT400047612	Potato	nucleus	47.77	29.23
KRH64496	Soybean	nucleus	30.3	24.57
KRH73997	Soybean	nucleus	30.48	24.26
KRH14137	Soybean	nucleus	30.48	24.19
KRH53452	Soybean	cytosol	29.77	24.13
KRH09248	Soybean	nucleus	32.09	23.11
KRH34004	Soybean	cytosol	12.83	22.64
KRH34003	Soybean	cytosol	11.59	22.34
KRH38748	Soybean	nucleus	32.26	22.29
KRH18160	Soybean	nucleus	30.48	22.18
KRH16532	Soybean	cytosol	30.3	22.08
KRH12028	Soybean	cytosol	10.16	21.11
KRH37055	Soybean	cytosol	10.16	21.11
KRH50796	Soybean	cytosol, nucleus, peroxisome	9.09	20.48
KRH54176	Soybean	nucleus	28.7	20.3
KRH63773	Soybean	nucleus	29.23	20.17
KRG92798	Soybean	cytosol	24.6	19.46
KRH02299	Soybean	cytosol	9.27	19.4
KRH11282	Soybean	nucleus	27.99	16.22
KRH21004	Soybean	nucleus	27.27	15.81
KRH50936	Soybean	nucleus	25.85	15.14
KRH02180	Soybean	cytosol, nucleus, plastid	25.67	13.79
KRG96896	Soybean	cytosol	25.85	13.71
KRH68628	Soybean	cytosol	26.02	13.68

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100813361	MapMan:35.2	EMBL:ACUP02000018	ncoils:Coil	InterPro:DUF3444
InterPro:DnaJ_domain	EnsemblPlantsGene:GLYMA_01G013800	UniProt:I1J4Q0	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
EnsemblPlants:KRH74334	ProteinID:KRH74334	ProteinID:KRH74334.1	PFAM:PF00226	PFAM:PF11926	PRINTS:PR00625
PFscan:PS50076	PANTHER:PTHR44137	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0002336DD0	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:1314163..1316550

Molecular Weight (calculated)

63275.5 Da

IEP (calculated)

9.308

GRAVY (calculated)

-0.661

Length

561 amino acids

Sequence
(BLAST)

001: MAEAESEALR LKAMAESKFK ASNNAKSALK YANRAHRLCP HLAGVPETVA ALSVLAAPDW YRALGAEPFA SSSVIRRQYK KLALLLHPDK NPHVASEEAF
101: KLLGEAFRFL SDRNRRREYD AELRRKIEAA ESESETFWTA CSTCRLLHQF ERRYLGQELV CPSCEKGFRA VEAVQSDDDG DVRVRSRRLK LKEMEKREIG
201: VEGKVGNAKE GRLGKRMCSV GEVLERAKPS NSKRVKKNGE EMMTLAEFQS QVKRKLQGEK LKAKGNEKEK EKEDGIEKRR NRAERRQGLR NNGGLEVGEV
301: RGLKKSVKPA IEEKRKGLRI EKHRGGSSGG DLEDMAVLDS DFYDFDKDRV EKSFKKGQVW AVYEDEDGMP RNYALIDETV SVNPFGVRIS WLDVQNSGDG
401: RIVSREKIGF HIPCGRFKAT RKASVNSVNI FSHVVDCDRA ARELYKIYPK KGSVWALYGE GSIDVDEGKG CYDIVVFLTS YNEVNGLSMA HLEKVDGYKT
501: VFKRQEKGSG AIRFLGKDDM WLVSHQIPAR KLLCDETPEL LKDCWELDPA SLPSDLLTIG G

Best Arabidopsis Sequence Match ( AT2G35540.1 )
(BLAST)

001: MASGSDSEVE KESIHHKALA ESSFNCGDLM SALTHARKAL SLSPNTEGLS AMVTAFEIIS SAATVAGGFP EWYKVLKVEP FSHINTIKQQ YRKLALVLHP
101: DKNPYVGCEE GFKLLNEAFR VFSDKVRRTE YDMKLRIRIQ GEMVSGGSGG DETSTFSAVC SGCRSVHKFD RKYLGQNLMC PTCKNSFEAK EVEKEEEGRE
201: NGACTSKIIT YSRRKRPVDS DGESLIKEVE TGEMSQEAAE AINVFEGSDE EDEGMMTLAE MQAVIKRNKS KVNSKITEKD SSGEENMGRE TQKRSLADAS
301: MTETLREMST NAVNNKQEVL KNRKNIKKKK MANHKDLTEI VDLEYVPRVD RKRDRGKLSQ EMYMEDEDFE LYDFDKDRMP RSFKKGQIWA IYDGGDDKMP
401: RSYCLVSEVV SLNPFKVWIS WLDFESEKLI SWMKISSSHM PCGRFRVSEK ALIEQVKPFS HLVNCERAAR EIYQIYPKKG SVWAVYSETN PGLQRRKTRR
501: YEIVVCLTMY TDAYGLSVAY LEKVNDYSNL FKRRDYGYNA VRWVEKEDVA ALLSHQIPAK KLPEDESGAD LKESWVLDLA SVPPDLVSAT

Arabidopsis Description

DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IKR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.