Factsheet for VIT_02s0012g02290.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74334	Soybean	cytosol, nucleus	53.13	55.97
KRH39596	Soybean	nucleus	53.98	55.09
GSMUA_Achr4P05630_001	Banana	cytosol	46.19	54.38
CDY32121	Canola	nucleus	36.04	45.81
Bra017315.1-P	Field mustard	nucleus	36.21	44.86
CDY40464	Canola	nucleus	36.21	44.58
AT2G35540.1	Thale cress	nucleus	43.99	44.07
Bra005331.1-P	Field mustard	nucleus	38.75	43.62
HORVU7Hr1G005730.1	Barley	cytosol	30.8	40.72
TraesCS7A01G033400.1	Wheat	plastid	30.63	40.13
TraesCS4A01G456000.1	Wheat	plastid	30.63	40.13
Os06t0111700-01	Rice	nucleus	32.15	39.75
CDY51818	Canola	nucleus	26.06	38.89
Zm00001d045553_P001	Maize	cytosol	31.3	38.87
EES11310	Sorghum	cytosol, plastid	31.13	37.4
KXG19130	Sorghum	cytosol	29.61	34.59
Solyc08g005300.1.1	Tomato	nucleus	51.95	33.66
PGSC0003DMT400047612	Potato	nucleus	52.12	33.59
VIT_17s0000g01140.t01	Wine grape	cytosol	13.87	32.54
VIT_01s0010g03770.t01	Wine grape	cytosol	11.51	28.1
VIT_16s0050g02590.t01	Wine grape	cytosol	30.96	24.63
VIT_12s0057g00710.t01	Wine grape	cytosol	28.76	24.5
VIT_01s0010g03760.t01	Wine grape	cytosol	30.29	21.91
VIT_17s0000g01150.t01	Wine grape	nucleus	28.93	19.3
VIT_05s0020g02050.t01	Wine grape	nucleus	25.72	18.2
VIT_05s0077g01780.t01	Wine grape	nucleus	6.43	17.43
VIT_14s0068g01140.t01	Wine grape	cytosol	18.78	14.76
VIT_14s0030g00640.t01	Wine grape	nucleus	27.41	13.86

Protein Annotations

Gene3D:1.10.287.110	MapMan:35.2	EMBL:AM460764	ProteinID:CAN83281	ProteinID:CAN83281.1	ProteinID:CCB57848
ProteinID:CCB57848.1	ncoils:Coil	InterPro:DUF3444	InterPro:DnaJ_domain	UniProt:F6HT38	EMBL:FN596247
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001623	InterPro:IPR013026	InterPro:IPR019734
InterPro:IPR036869	InterPro:J_dom_sf	PFAM:PF00226	PFAM:PF11926	PRINTS:PR00625	PFscan:PS50005
PFscan:PS50076	PFscan:PS50293	PANTHER:PTHR44137	SMART:SM00271	SUPFAM:SSF46565	InterPro:TPR-contain_dom
InterPro:TPR_repeat	UniParc:UPI000210993E	ArrayExpress:VIT_02s0012g02290	EnsemblPlantsGene:VIT_02s0012g02290	EnsemblPlants:VIT_02s0012g02290.t01	SEG:seg

Description

No Description!

Coordinates

chr2:+:9220337..9222116

Molecular Weight (calculated)

68069.5 Da

IEP (calculated)

9.729

GRAVY (calculated)

-0.773

Length

591 amino acids

Sequence
(BLAST)

001: MEREKALTLK AVAEEKYKQS KLKSALKYAR KALRLSPDLD GVSEMITAFK ILRVGGKRSG AGDSPDWYKI LQVEPFSHIN SIKKQYKKLA LVLHPDKNPF
101: VASEEAFKLI GEAFRCLSDK IRRKEYDLKL RIAMQSAAAG DGGGGATETF WTACSTCRLL HQFERKYIGQ NLMCPSCKKS FLALEVENQN NEVLASKESG
201: SRVGRLRNVR SVRKMMSSDV ETTAGKSKNA DLNTENVRKP RTVGSKRKMS SVNEVLERSK VRREMTLAEM QMEAKRKAQE EKKKEKLKEE QEKEKKKRNE
301: VKEKEKEKEK EVQDKVKESR SRTKSGGGLE IQKRRASKGD GLELERRGAW KSGDFEIMTV EDSDFYDFDK DRVERSFKKG QVWAIYDDDD GMPRHYGLID
401: EVVSVNPFQM KMSWLDLQDN GDEGLIFWEK LGFHVSCGRF KVAKKTLINS VNFFSHVVDC ERAAREVYRI YPKKGSVWAL YNQEALGTEE RNSGSNKRCY
501: DIVVFLTSYS EMYGLSMAYL EKVEGFKTVF KRQEIGCRAI RWLEKDDIRM FSHQIPARKL CEEESLDPSK DYWELDPASL PSDLLTIGWQ R

Best Arabidopsis Sequence Match ( AT2G35540.1 )
(BLAST)

001: MASGSDSEVE KESIHHKALA ESSFNCGDLM SALTHARKAL SLSPNTEGLS AMVTAFEIIS SAATVAGGFP EWYKVLKVEP FSHINTIKQQ YRKLALVLHP
101: DKNPYVGCEE GFKLLNEAFR VFSDKVRRTE YDMKLRIRIQ GEMVSGGSGG DETSTFSAVC SGCRSVHKFD RKYLGQNLMC PTCKNSFEAK EVEKEEEGRE
201: NGACTSKIIT YSRRKRPVDS DGESLIKEVE TGEMSQEAAE AINVFEGSDE EDEGMMTLAE MQAVIKRNKS KVNSKITEKD SSGEENMGRE TQKRSLADAS
301: MTETLREMST NAVNNKQEVL KNRKNIKKKK MANHKDLTEI VDLEYVPRVD RKRDRGKLSQ EMYMEDEDFE LYDFDKDRMP RSFKKGQIWA IYDGGDDKMP
401: RSYCLVSEVV SLNPFKVWIS WLDFESEKLI SWMKISSSHM PCGRFRVSEK ALIEQVKPFS HLVNCERAAR EIYQIYPKKG SVWAVYSETN PGLQRRKTRR
501: YEIVVCLTMY TDAYGLSVAY LEKVNDYSNL FKRRDYGYNA VRWVEKEDVA ALLSHQIPAK KLPEDESGAD LKESWVLDLA SVPPDLVSAT

Arabidopsis Description

DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IKR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.