Factsheet for VIT_17s0000g01150.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g01140.t01	Wine grape	cytosol	20.2	71.03
VIT_01s0010g03770.t01	Wine grape	cytosol	16.14	59.09
VIT_01s0010g03760.t01	Wine grape	cytosol	47.07	51.04
VIT_16s0050g02590.t01	Wine grape	cytosol	42.78	51.01
GSMUA_Achr8P00660_001	Banana	cytosol	34.65	51.0
GSMUA_Achr11P...	Banana	cytosol	27.31	48.21
KRH54176	Soybean	nucleus	41.2	46.03
GSMUA_Achr10P...	Banana	cytosol	31.83	46.0
GSMUA_Achr2P21160_001	Banana	cytosol	27.88	45.91
PGSC0003DMT400039476	Potato	nucleus	41.2	45.34
GSMUA_Achr6P12230_001	Banana	nucleus	29.35	44.83
KRH63773	Soybean	nucleus	40.63	44.28
TraesCS3B01G607500.1	Wheat	cytosol	36.0	42.99
TraesCS3D01G541800.1	Wheat	cytosol	35.89	42.63
Os02t0510000-01	Rice	cytosol	35.21	42.51
GSMUA_Achr3P02570_001	Banana	nucleus	25.06	42.45
OQU85000	Sorghum	cytosol	34.88	42.45
Zm00001d025584_P001	Maize	cytosol	35.1	42.43
TraesCS3A01G536400.1	Wheat	cytosol	35.44	42.32
EES07899	Sorghum	cytosol	35.1	42.31
Os03t0401200-01	Rice	cytosol	35.67	42.25
TraesCS2A01G284200.2	Wheat	cytosol	34.88	42.16
TraesCS2D01G283100.2	Wheat	cytosol	34.88	42.16
Zm00001d025585_P001	Maize	cytosol	34.65	41.88
Zm00001d003948_P001	Maize	cytosol	34.65	41.71
EES10633	Sorghum	cytosol	34.42	41.5
TraesCS2B01G301100.1	Wheat	cytosol	32.96	41.36
Zm00001d050565_P001	Maize	cytosol	29.8	40.99
Zm00001d025238_P001	Maize	cytosol	33.86	40.87
EES10933	Sorghum	cytosol	33.3	40.75
TraesCS5A01G493100.1	Wheat	cytosol	34.65	40.34
TraesCS4D01G315600.1	Wheat	cytosol	34.42	40.08
Os04t0388800-01	Rice	nucleus	26.98	39.97
VIT_12s0057g00710.t01	Wine grape	cytosol	31.15	39.77
Solyc03g019640.1.1	Tomato	nucleus	39.73	37.89
TraesCS4B01G319100.1	Wheat	cytosol	30.02	37.36
TraesCS3B01G470100.1	Wheat	nucleus	29.12	35.54
Os01t0923800-01	Rice	nucleus	29.01	34.54
TraesCS3A01G435100.1	Wheat	nucleus	29.91	33.5
KXG34016	Sorghum	nucleus	29.8	31.85
Zm00001d011997_P001	Maize	nucleus	28.89	31.14
VIT_02s0012g02290.t01	Wine grape	nucleus	19.3	28.93
VIT_05s0020g02050.t01	Wine grape	nucleus	21.11	22.4
VIT_05s0077g01780.t01	Wine grape	nucleus	4.97	20.18
VIT_14s0030g00640.t01	Wine grape	nucleus	23.59	17.88
VIT_14s0068g01140.t01	Wine grape	cytosol	13.66	16.09

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100854062	wikigene:100854062	MapMan:35.2	EMBL:AM438530	ProteinID:CAN73866
ProteinID:CAN73866.1	ProteinID:CCB43335	ProteinID:CCB43335.1	InterPro:DUF3444	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
UniProt:F6GSW6	EMBL:FN594950	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EntrezGene:LOC100854062
wikigene:LOC100854062	PFAM:PF00226	PFAM:PF11926	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076
PANTHER:PTHR44137	PANTHER:PTHR44137:SF4	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0002109CD0	ArrayExpress:VIT_17s0000g01150
EnsemblPlantsGene:VIT_17s0000g01150	EnsemblPlants:VIT_17s0000g01150.t01	unigene:Vvi.2164	unigene:Vvi.25794	RefSeq:XP_003634291	RefSeq:XP_003634291.1
RefSeq:XP_019081857.1	RefSeq:XP_019081858.1	RefSeq:XP_019081859.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:818277..821660

Molecular Weight (calculated)

97935.7 Da

IEP (calculated)

9.268

GRAVY (calculated)

-0.884

Length

886 amino acids

Sequence
(BLAST)

001: MECNKDEAIR AKGISERKMT EKDMAGARKF AMKAQNLYPG LDGLPQLLAT IDVYVASERK VNGEVDWYGV LGVDPSADDD TIRKHYRKLA LVLHPDKNKL
101: EVADGAFKIL SEAWSLLSDK AKRTAYDLKR NPRGANLKVP SGSRPAPATG NNGGHSFTSS NNTARNRSAP QTGNNGGRGF TSSNNTTRNQ SASRTSNNGA
201: HNFTSNNTTR NQSAPPTGNN GGHNFTRSNN TNRNRSAPVS NSGAHNFTSS DNTMMNQSAP AGNNGVHRAK DDKRTTNPKP ARPPPSSSKP NTFWTLCSLC
301: RMQYEYLRTY LNHTLLCPNC HEPFLAFETP PPPAYTHGSY TPWTAYQQKQ SSNQQTGLHT TKENTVSSGK DPASTPNAEP ACSSGVASFN HANNAANNAS
401: GSYSKSDSVR TTASASSCAQ STHGFQPTYE KLEREHKEAK TTAMKEPTLP RKTTVSKKSG GLATGASNIG SSSVFKGESP VKRRRINEFS PNDSRSQGTN
501: QMRMENGGAG IGNLPGFQNC NSEMGRINAS RSTRLDIRRE PSQLEIRNML MEKARRELVK KLSEWSSAAE SKASVQEEQE KEKEKEKPKA TVSGRKSNAS
601: KSSESADTIN RIRPKTLSAT LPTDADENET EPMTMSVPDP DIHDFDKDRT ELSFGENQVW AAYDDDDGMP RYYAMIHSVI SLKPFKLRIS WLNAKSNTEL
701: APLNWVVSGF SKTSGEFRIG KQMDNDSLNS FSHKVKWTKG VRGRIQIYPR KGDVWALYRN WSPDWDELTP DEVIHKYEMV EVIKDYNEDQ GVVVVPLVKV
801: SGFKTVFHQH LDPNKVRMIP REELFRFSHQ VPSYLLTGQE AENAPKGCLE LDPAATPVEL LQVITDFKEE ETAVASEKGN EEVEET

Best Arabidopsis Sequence Match ( AT5G53150.3 )
(BLAST)

001: MECNKDEAKR AMDIAERKMT EKDYTGAKKF ANKAQNLFPE LDGLKQLFVA INVYISGEKT FAGEADWYGV LGVDPFASDE ALKKQYRKLV LMLHPDKNKC
101: KGAEGAFNLV AEAWALLSDK DKRILYNVKR GKDVKAAQQR FPTTQREIPS HQPTSNGIPN VREHVVSSAR ARYKPATRKP AARMDRSRTG SPAFVYPTQE
201: SSTFWTMCNK CDTQYEYQRV YLNQTLLCPH CHHGFVAEEK TPPTNIPKPP VNISSNQHHR SSKNQASNKN SNGSSYRREP ATSVNHNFQW DSSRMGGSYS
301: RNATNETANV VQQGQDKLKR VFWETQEREA ARGFTNSDLG NFKRQKTDDS HMRGPSAGKL SNQIGASRSS TPFYAANENT ESSNTIGSRH PYVQALLRSD
401: IKKALMDRGQ SEIFKRLPMM IAKMEGKVNP TEGEKNSTKA MSSKASEVER SKMSSTANEV ERSVEVIPHE SDEVKEIVVP DSDFHNFDLD RSESAFKDDQ
501: IWAAYDDADG MPRFYARIQK VISVNPFKLK ISWLNSKTTS EFGPIDWMGA GFAKSCGDFR CGRYESTDTL NAFSHSVDFT KGARGLLHIL PKKGQVWALY
601: RNWSPEWDKN TPDEVKHKYE MVEVLDDYTE DDQSLTVALL LKAEGFRVVF RRCTEKLGVR KIAKEEMLRF SHQVPHYILT GKEADNAPEG FLELDPAATP
701: CAFSSENAEA DEKSEAVKEN EQGEAVKENE ESEALKENEE SEAVKENEEV GMDLD

Arabidopsis Description

DnaJ heat shock amino-terminal domain protein [Source:UniProtKB/TrEMBL;Acc:Q9FGM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.