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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • endoplasmic reticulum 1
  • cytosol 2
  • golgi 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, endoplasmic reticulum, golgi, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:endoplasmic reticulum
MultiLoc:cytosol
Plant-mPloc:golgi
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_06s0004g03280.t01
VIT_13s0139g00390.t01
VIT_13s0139g00410.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G05230.1 VIT_13s0139g00390.t01 AT4G36690.1 21798944
AT2G05230.1 VIT_13s0139g00410.t01 AT4G36690.1 21798944
AT2G05230.1 VIT_06s0004g03280.t01 AT5G60340.1 21798944
AT2G05250.1 VIT_13s0139g00390.t01 AT4G36690.1 21798944
AT2G05250.1 VIT_13s0139g00410.t01 AT4G36690.1 21798944
AT2G05250.1 VIT_06s0004g03280.t01 AT5G60340.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH73997 Soybean nucleus 68.01 66.95
KRH14137 Soybean nucleus 68.01 66.76
PGSC0003DMT400015678 Potato nucleus 63.4 55.84
Solyc07g047690.1.1 Tomato nucleus 63.26 55.71
Solyc05g040050.1.1 Tomato nucleus 61.24 54.28
PGSC0003DMT400048481 Potato cytosol 61.1 54.15
CDX74632 Canola cytosol 43.66 51.62
CDY47298 Canola cytosol 43.37 51.54
Bra035378.1-P Field mustard cytosol 50.58 51.02
CDY15046 Canola nucleus 50.58 50.87
Bra013179.1-P Field mustard nucleus 50.72 50.79
CDX93081 Canola nucleus 50.72 50.79
AT2G05250.1 Thale cress cytosol 51.44 50.57
AT2G05230.1 Thale cress cytosol 51.44 50.57
VIT_17s0000g01140.t01 Wine grape cytosol 17.58 48.41
VIT_01s0010g03770.t01 Wine grape cytosol 16.14 46.28
GSMUA_Achr8P00660_001 Banana cytosol 37.46 43.19
VIT_16s0050g02590.t01 Wine grape cytosol 42.22 39.43
GSMUA_Achr10P... Banana cytosol 34.44 38.99
GSMUA_Achr2P21160_001 Banana cytosol 30.12 38.85
GSMUA_Achr11P... Banana cytosol 28.1 38.84
GSMUA_Achr6P12230_001 Banana nucleus 31.99 38.28
TraesCS3B01G607500.1 Wheat cytosol 40.78 38.14
TraesCS3A01G536400.1 Wheat cytosol 40.63 38.01
GSMUA_Achr3P02570_001 Banana nucleus 28.53 37.86
TraesCS3D01G541800.1 Wheat cytosol 40.49 37.67
OQU85000 Sorghum cytosol 39.48 37.64
Os03t0401200-01 Rice cytosol 40.35 37.43
Os02t0510000-01 Rice cytosol 39.34 37.19
EES07899 Sorghum cytosol 39.34 37.14
Zm00001d025584_P001 Maize cytosol 39.05 36.97
TraesCS2A01G284200.2 Wheat cytosol 39.05 36.97
TraesCS2D01G283100.2 Wheat cytosol 39.05 36.97
Zm00001d025585_P001 Maize cytosol 39.05 36.97
TraesCS2B01G301100.1 Wheat cytosol 37.03 36.4
EES10633 Sorghum cytosol 38.47 36.33
HORVU1Hr1G001860.1 Barley nucleus 22.91 36.14
Zm00001d025238_P001 Maize cytosol 38.18 36.1
TraesCS5A01G493100.1 Wheat cytosol 39.48 36.01
Zm00001d003948_P001 Maize cytosol 38.04 35.87
VIT_01s0010g03760.t01 Wine grape cytosol 42.22 35.86
Zm00001d050565_P001 Maize cytosol 33.14 35.71
EES10933 Sorghum cytosol 37.18 35.64
TraesCS4D01G315600.1 Wheat cytosol 38.33 34.95
Os04t0388800-01 Rice nucleus 27.95 32.44
TraesCS4B01G319100.1 Wheat cytosol 33.14 32.3
Os01t0923800-01 Rice nucleus 33.43 31.18
VIT_17s0000g01150.t01 Wine grape nucleus 39.77 31.15
TraesCS3B01G470100.1 Wheat nucleus 32.28 30.85
TraesCS3A01G435100.1 Wheat nucleus 33.57 29.46
VIT_02s0012g02290.t01 Wine grape nucleus 24.5 28.76
KXG34016 Sorghum nucleus 32.42 27.14
Zm00001d011997_P001 Maize nucleus 31.7 26.76
VIT_05s0020g02050.t01 Wine grape nucleus 25.22 20.96
VIT_05s0077g01780.t01 Wine grape nucleus 5.91 18.81
VIT_14s0068g01140.t01 Wine grape cytosol 17.15 15.82
VIT_14s0030g00640.t01 Wine grape nucleus 26.51 15.74
Protein Annotations
Gene3D:1.10.287.110MapMan:35.2ProteinID:CCB51724ProteinID:CCB51724.1ncoils:CoilInterPro:DUF3444
InterPro:DnaJ_domainUniProt:F6HHM8EMBL:FN595759InterPro:IPR001623InterPro:IPR036869InterPro:J_dom_sf
PFAM:PF00226PFAM:PF11926PRINTS:PR00625PFscan:PS50076PANTHER:PTHR44137PANTHER:PTHR44137:SF2
SMART:SM00271SUPFAM:SSF46565TIGR:TC57791TIGR:TC69977UniParc:UPI0002108D9FArrayExpress:VIT_12s0057g00710
EnsemblPlantsGene:VIT_12s0057g00710EnsemblPlants:VIT_12s0057g00710.t01SEG:seg:::
Description
No Description!
Coordinates
chr12:-:9329408..9331895
Molecular Weight (calculated)
76532.8 Da
IEP (calculated)
7.853
GRAVY (calculated)
-0.493
Length
694 amino acids
Sequence
(BLAST)
001: MELKKEEALR AKENAEKQFA EKNFAGAKNF ALKAQSVCPD LEGISQMVAT FEVYIASEVK VNGETDYYSI LGLLPTADKA TVKKQYRKLA VLLHPDKNKT
101: VGADGAFKLV SEAWTLLSDS AKRSSYDLRR SQLLSSAVVQ RSSASAHTAG FTGFDNCSHS PVTHTRLDTF WTVCTSCKVQ YEYLRKYLNK RLSCKNCRGT
201: FMAVETGTAP VNGSFPYCSW SHLHENGYGT HGFNGVTYFP TNATFYSRNG VSGYHSGHGS EYVPNVPFQW SSFPAASTGI GGPNGSAAKS ADVVYHTTES
301: INRAGEKANR PDKKRKIEGR GASRNGNDEM GSKTATEVTT ANGNGNVGLN PKLSTASETV AKRPSVAPAF DARKLLIEKA RTEIRKKLEE MKLAAAAAAE
401: AAAAAKAARE AAEAVAAAAA RENVELPKRA YLGVPGHQSE LHRTGSTTSI TVPDPDFHDF DKDRSEECFK PKQIWAIYDE EDGMPRLYCL IREVISVKPF
501: KVHISYLNSK TDAEFGSVNW IDSGFTKSCG NFRAWNSDIV EQVNIFSHLL SGEKAGRGGC VRIYPKSGNI WAVYRNWSPD WNRSTPDEVR HQYEMVEVLD
601: DYSEELGVCI VPLVKLDGFK TVYQRNTDKN AIQWIPRREM LRFSHQVPSW LLKGEASNLP EGCWDLDPAA TPDELLQTAT PDELLQAATE VKAE
Best Arabidopsis Sequence Match ( AT2G05250.1 )
(BLAST)
001: MEAYREEALR VKQIAERRFA EKDFTSARSY ALKAKSLFPD LEGLSQMVAT FEVYLASQTR SGGQIDYYAV LGLKPSAGKR EVKKQYKKMA VLLHPDKNKC
101: IGADGAFHLI SEAWSFLSNE FNKSTFYYKR KKHIDSTEVQ KHSTEYMPGT GTGTGTAVFD RFPPSSERLD TFWTVCTSCK VQYEYLRKYV NKRLSCKNCR
201: GAFIAVETGP APVSAPFHYT PPSHAPPSHA PPSHAPPSNG YGAHGYDAMS RMPTNSTYFL GHYPGQGHGY DYSTNGSYEW SSYSGTTTSP GNLDLKRVSS
301: VSNGYPYKHS NSVVSGGINK VKDGSNGTCS KKSTPGGLIY PNQISMSAHA SANKVGRPGK KSKVFMEAAA NGFVENPLRS VSVSKTANTD AKMDQDYKLH
401: IQSSTRRWSA ASVLDTRKPL IQKARTDIKQ RLEMMRLALE AAAAAEDATP LDEKTVLSCK LGDVTGRKTN GPITVPDSDF HDFDKNRSEE SFEPRQIWAI
501: YDEDDGMPRL YCVVREVLSV QPFKIDIAYL SSKTDIEFGS MKWVQYGFTK SCGHFRIRNS DIVDHVNIFS HLLKGKKTGR GGCVRIFPTA GEIWAVYKNW
601: SLNWDGSTPD EVRHQYEMVE ILDEYTEQYG VCVTPLVKLE GYKTVYHRST REDSKKWIPR CEMLRFSHQV PSWFLKDATS GFPENCWDLD PAAIPEELLH
701: IGAGTN
Arabidopsis Description
At2g05250/F5G3.15 [Source:UniProtKB/TrEMBL;Acc:Q9S7L6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.