Factsheet for GSMUA_Achr6P12230_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P11020_001
GSMUA_Achr4P16510_001
GSMUA_Achr8P34050_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G05230.1	GSMUA_Achr4P11020_001	AT4G36690.1	21798944
AT2G05230.1	GSMUA_Achr4P16510_001	AT4G36690.1	21798944
AT2G05230.1	GSMUA_Achr8P34050_001	AT5G60340.1	21798944
AT2G05250.1	GSMUA_Achr4P11020_001	AT4G36690.1	21798944
AT2G05250.1	GSMUA_Achr4P16510_001	AT4G36690.1	21798944
AT2G05250.1	GSMUA_Achr8P34050_001	AT5G60340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P21160_001	Banana	cytosol	65.69	70.82
GSMUA_Achr3P02570_001	Banana	nucleus	58.79	65.2
GSMUA_Achr10P...	Banana	cytosol	47.59	45.02
GSMUA_Achr11P...	Banana	cytosol	38.97	45.02
VIT_17s0000g01140.t01	Wine grape	cytosol	19.48	44.84
GSMUA_Achr8P00660_001	Banana	cytosol	45.34	43.69
Os02t0510000-01	Rice	cytosol	53.79	42.51
CDY31307	Canola	cytosol	6.72	42.39
TraesCS2A01G284200.2	Wheat	cytosol	52.76	41.75
TraesCS2D01G283100.2	Wheat	cytosol	52.76	41.75
HORVU2Hr1G070040.6	Barley	cytosol	52.76	41.52
OQU85000	Sorghum	cytosol	51.9	41.35
Bra031906.1-P	Field mustard	cytosol	6.55	41.3
Os04t0388800-01	Rice	nucleus	42.24	40.97
TraesCS2B01G301100.1	Wheat	cytosol	49.66	40.79
Zm00001d050565_P001	Maize	cytosol	45.0	40.53
EES10633	Sorghum	cytosol	51.21	40.41
Bra020958.1-P	Field mustard	cytosol	7.07	40.2
CDX76476	Canola	cytosol	7.07	40.2
Zm00001d025238_P001	Maize	cytosol	50.52	39.92
Zm00001d003948_P001	Maize	cytosol	50.0	39.4
VIT_01s0010g03770.t01	Wine grape	cytosol	16.38	39.26
CDX99361	Canola	cytosol	9.31	36.99
CDY60891	Canola	cytosol, mitochondrion, nucleus	11.03	36.78
KRH53452	Soybean	cytosol	43.45	36.42
Bra020957.1-P	Field mustard	cytosol	12.93	36.41
CDX76475	Canola	cytosol	12.76	35.92
KRH64496	Soybean	nucleus	42.76	35.84
PGSC0003DMT400039473	Potato	nucleus	8.97	35.14
VIT_01s0010g03760.t01	Wine grape	cytosol	47.07	33.41
VIT_16s0050g02590.t01	Wine grape	cytosol	42.76	33.38
Solyc03g019630.1.1	Tomato	nucleus	8.97	33.33
KRG89459	Soybean	cytosol	6.21	33.03
PGSC0003DMT400023514	Potato	cytosol	41.72	32.93
PGSC0003DMT400085016	Potato	cytosol	7.24	32.31
KRH18160	Soybean	nucleus	42.59	32.04
VIT_12s0057g00710.t01	Wine grape	cytosol	38.28	31.99
Solyc03g007280.2.1	Tomato	cytosol	10.69	31.79
KRH16532	Soybean	cytosol	42.07	31.69
Bra034258.1-P	Field mustard	cytosol	33.62	31.5
KRH09248	Soybean	nucleus	41.72	31.07
CDY19683	Canola	cytosol	36.9	30.88
CDY35353	Canola	cytosol	33.1	30.82
CDY60893	Canola	cytosol	8.45	30.82
CDY60894	Canola	cytosol	8.45	30.82
KRH38748	Soybean	nucleus	42.59	30.42
CDX76474	Canola	cytosol	12.59	30.42
CDX99362	Canola	nucleus	14.83	30.18
Bra003079.1-P	Field mustard	cytosol	36.72	30.04
CDY49460	Canola	nucleus	33.62	29.91
KRH14137	Soybean	nucleus	36.38	29.84
KRH73997	Soybean	nucleus	36.21	29.79
CDY12382	Canola	nucleus	18.79	29.78
CDY09330	Canola	cytosol	11.55	29.78
CDX76994	Canola	nucleus	29.83	29.73
CDY27107	Canola	nucleus	18.62	29.51
PGSC0003DMT400092645	Potato	cytosol	6.55	29.46
VIT_17s0000g01150.t01	Wine grape	nucleus	44.83	29.35
CDY60890	Canola	cytosol	12.24	29.34
PGSC0003DMT400059130	Potato	cytosol	39.31	29.31
AT2G25560.1	Thale cress	cytosol	33.1	29.27
CDX76473	Canola	cytosol	12.07	28.93
PGSC0003DMT400039476	Potato	nucleus	40.0	28.82
Solyc01g044270.2.1	Tomato	cytosol	38.62	28.79
Bra038959.1-P	Field mustard	nucleus	18.97	28.57
KRH54176	Soybean	nucleus	38.97	28.5
CDX78942	Canola	cytosol	14.66	27.78
KRH63773	Soybean	nucleus	38.79	27.68
Bra035378.1-P	Field mustard	cytosol	32.24	27.18
AT5G37380.6	Thale cress	nucleus	20.17	27.15
AT5G53150.3	Thale cress	cytosol	35.17	27.02
PGSC0003DMT400015678	Potato	nucleus	36.55	26.9
CDY47298	Canola	cytosol	27.07	26.88
CDX74632	Canola	cytosol	27.07	26.75
CDX76752	Canola	nucleus	28.45	26.66
Solyc07g047690.1.1	Tomato	nucleus	36.21	26.65
Bra020955.1-P	Field mustard	cytosol	12.93	26.6
Bra007790.1-P	Field mustard	nucleus	27.07	26.52
CDY11521	Canola	nucleus	27.07	26.52
AT5G35753.1	Thale cress	cytosol	19.48	26.34
Bra013179.1-P	Field mustard	nucleus	31.38	26.26
CDX93081	Canola	nucleus	31.38	26.26
CDY15046	Canola	nucleus	31.03	26.09
Solyc05g040050.1.1	Tomato	nucleus	35.17	26.05
AT5G50115.1	Thale cress	cytosol	21.72	25.98
CDX99360	Canola	cytosol	14.83	25.83
PGSC0003DMT400048481	Potato	cytosol	34.66	25.67
AT2G05230.1	Thale cress	cytosol	31.21	25.64
AT2G05250.1	Thale cress	cytosol	31.21	25.64
Solyc03g019640.1.1	Tomato	nucleus	40.17	25.08
CDY60010	Canola	cytosol, mitochondrion, nucleus	9.14	24.09
Bra020956.1-P	Field mustard	nucleus	14.31	23.78
CDY12569	Canola	cytosol	14.14	22.91
AT4G19580.1	Thale cress	cytosol	12.24	22.76
GSMUA_Achr11P...	Banana	cytosol	8.97	22.71
GSMUA_Achr4P05630_001	Banana	cytosol	19.48	22.51
AT5G62780.1	Thale cress	cytosol	7.93	22.22
Bra040300.1-P	Field mustard	cytosol	13.97	21.95
Bra013403.1-P	Field mustard	nucleus	19.83	21.22
CDX78941	Canola	nucleus	19.83	20.83
GSMUA_Achr2P02410_001	Banana	cytosol	27.24	20.41
PGSC0003DMT400092668	Potato	cytosol	5.0	19.59
GSMUA_Achr11P...	Banana	nucleus	22.07	19.57
Bra013404.1-P	Field mustard	nucleus	14.66	19.06
GSMUA_Achr5P00460_001	Banana	cytosol	23.62	18.84
PGSC0003DMT400086295	Potato	mitochondrion	7.07	18.81
GSMUA_Achr3P24140_001	Banana	nucleus	7.24	18.26
GSMUA_Achr1P24750_001	Banana	cytosol	7.59	17.89
AT4G19570.1	Thale cress	nucleus	16.55	17.2
PGSC0003DMT400094007	Potato	extracellular, plasma membrane	7.07	14.39
PGSC0003DMT400080343	Potato	cytosol	13.97	13.13
Solyc01g057750.1.1	Tomato	cytosol	13.97	13.06
PGSC0003DMT400096427	Potato	cytosol	13.79	13.01
Solyc07g039220.1.1	Tomato	cytosol	7.59	12.46
Solyc01g057650.1.1	Tomato	cytosol	3.1	10.53
GSMUA_Achr11P...	Banana	cytosol	0.17	0.61
Bra002184.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr6P12230_001	EnsemblPlants:GSMUA_Achr6T12230_001	EnsemblPlantsGene:GSMUA_Achr6G12230_001	Gene3D:1.10.287.110	InterPro:DUF3444	InterPro:DnaJ_domain
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil	PANTHER:PTHR44137	PANTHER:PTHR44137:SF4
PFAM:PF00226	PFAM:PF11926	PFscan:PS50076	PRINTS:PR00625	SEG:seg	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI0002967DAB	UniProt:M0T6C1	MapMan:35.2	:	:

Description

Putative dnaJ domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G12230_001]

Coordinates

chr6:-:8174270..8176567

Molecular Weight (calculated)

66086.0 Da

IEP (calculated)

6.644

GRAVY (calculated)

-0.861

Length

580 amino acids

Sequence
(BLAST)

001: MDCDREEALK AKETAERKFN NKDVKGKKIN GESDWYAILS VDATADEETL KKHYRQLALQ LHPDKNKSVG AEGAFKLISE AWNVFSDKNR KMAYDQMRNV
101: DARKRKTGSA PSAAPPQPHP INLNTFWTSC NCCRMQYEYL RTYLNHNLLC PNCHQAFMAI EIGIPGNAAN SSISWSARQH EHNSNYKYTI KNGYSSGSFT
201: GSSGTSSTTD SAFQPANLIH KKFGKKRRKH EAQAAARREE SFRTDYHVYK SADDGSRNYN DGHTLTSYDQ DRCISKAARP AKRRNNGDQS GDCYRTDETE
301: NMSTSIEDTI NPEVEREYSQ VNIWKMLTEK AKAAIGIKLE EWNLAQANKL EEKEKLRRQN GQEASAIDAN TGKHDSSIRE SSAHGLDVNT AKKVVKHVSI
401: DVPDPDFYDF DKDRLEMTFE GDQVWATYDS EDVRWEKGPR GVIRIVPKKG DIWALYRNWS PDWNELTPDD VIYKYEMVEV LDDYTDDHGV SVIPLVKVAG
501: FKAVFHRHMD PLEVKRITRE EMFRFSHQVP SYLLTGEEAH NALKGCLELD PAATPVELLQ VITEVKEDLG MEINKQQSGN

Best Arabidopsis Sequence Match ( AT5G53150.3 )
(BLAST)

001: MECNKDEAKR AMDIAERKMT EKDYTGAKKF ANKAQNLFPE LDGLKQLFVA INVYISGEKT FAGEADWYGV LGVDPFASDE ALKKQYRKLV LMLHPDKNKC
101: KGAEGAFNLV AEAWALLSDK DKRILYNVKR GKDVKAAQQR FPTTQREIPS HQPTSNGIPN VREHVVSSAR ARYKPATRKP AARMDRSRTG SPAFVYPTQE
201: SSTFWTMCNK CDTQYEYQRV YLNQTLLCPH CHHGFVAEEK TPPTNIPKPP VNISSNQHHR SSKNQASNKN SNGSSYRREP ATSVNHNFQW DSSRMGGSYS
301: RNATNETANV VQQGQDKLKR VFWETQEREA ARGFTNSDLG NFKRQKTDDS HMRGPSAGKL SNQIGASRSS TPFYAANENT ESSNTIGSRH PYVQALLRSD
401: IKKALMDRGQ SEIFKRLPMM IAKMEGKVNP TEGEKNSTKA MSSKASEVER SKMSSTANEV ERSVEVIPHE SDEVKEIVVP DSDFHNFDLD RSESAFKDDQ
501: IWAAYDDADG MPRFYARIQK VISVNPFKLK ISWLNSKTTS EFGPIDWMGA GFAKSCGDFR CGRYESTDTL NAFSHSVDFT KGARGLLHIL PKKGQVWALY
601: RNWSPEWDKN TPDEVKHKYE MVEVLDDYTE DDQSLTVALL LKAEGFRVVF RRCTEKLGVR KIAKEEMLRF SHQVPHYILT GKEADNAPEG FLELDPAATP
701: CAFSSENAEA DEKSEAVKEN EQGEAVKENE ESEALKENEE SEAVKENEEV GMDLD

Arabidopsis Description

DnaJ heat shock amino-terminal domain protein [Source:UniProtKB/TrEMBL;Acc:Q9FGM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.