Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_17s0000g01140.t01 | Wine grape | cytosol | 22.27 | 42.86 |
| GSMUA_Achr8P00660_001 | Banana | cytosol | 33.61 | 27.08 |
| GSMUA_Achr2P21160_001 | Banana | cytosol | 26.8 | 24.16 |
| GSMUA_Achr3P02570_001 | Banana | nucleus | 25.98 | 24.09 |
| GSMUA_Achr11P... | Banana | cytosol | 24.54 | 23.71 |
| HORVU1Hr1G001860.1 | Barley | nucleus | 20.82 | 22.95 |
| GSMUA_Achr10P... | Banana | cytosol | 27.63 | 21.86 |
| GSMUA_Achr6P12230_001 | Banana | nucleus | 25.98 | 21.72 |
| TraesCS3D01G541800.1 | Wheat | cytosol | 33.4 | 21.72 |
| TraesCS2A01G284200.2 | Wheat | cytosol | 32.78 | 21.69 |
| TraesCS2D01G283100.2 | Wheat | cytosol | 32.78 | 21.69 |
| AT2G25560.1 | Thale cress | cytosol | 29.28 | 21.65 |
| OQU85000 | Sorghum | cytosol | 32.37 | 21.57 |
| AT5G35753.1 | Thale cress | cytosol | 18.97 | 21.45 |
| EES10633 | Sorghum | cytosol | 32.37 | 21.36 |
| Os03t0401200-01 | Rice | cytosol | 32.78 | 21.26 |
| TraesCS3A01G536400.1 | Wheat | cytosol | 32.37 | 21.16 |
| TraesCS3B01G607500.1 | Wheat | cytosol | 32.37 | 21.16 |
| Zm00001d025238_P001 | Maize | cytosol | 31.96 | 21.12 |
| Zm00001d003948_P001 | Maize | cytosol | 31.96 | 21.06 |
| Os02t0510000-01 | Rice | cytosol | 31.75 | 20.98 |
| EES07899 | Sorghum | cytosol | 31.75 | 20.95 |
| TraesCS4D01G315600.1 | Wheat | cytosol | 32.58 | 20.76 |
| TraesCS5A01G493100.1 | Wheat | cytosol | 32.37 | 20.63 |
| Zm00001d025585_P001 | Maize | cytosol | 30.93 | 20.46 |
| TraesCS2B01G301100.1 | Wheat | cytosol | 29.69 | 20.4 |
| Zm00001d025584_P001 | Maize | cytosol | 30.52 | 20.19 |
| AT5G53150.3 | Thale cress | cytosol | 31.13 | 20.0 |
| TraesCS3B01G470100.1 | Wheat | nucleus | 29.28 | 19.56 |
| AT2G05250.1 | Thale cress | cytosol | 28.04 | 19.26 |
| AT2G05230.1 | Thale cress | cytosol | 28.04 | 19.26 |
| EES10933 | Sorghum | cytosol | 28.66 | 19.2 |
| Os01t0923800-01 | Rice | nucleus | 28.87 | 18.82 |
| Os04t0388800-01 | Rice | nucleus | 23.09 | 18.73 |
| Zm00001d050565_P001 | Maize | cytosol | 24.54 | 18.48 |
| TraesCS4B01G319100.1 | Wheat | cytosol | 26.8 | 18.26 |
| KXG34016 | Sorghum | nucleus | 31.13 | 18.21 |
| TraesCS3A01G435100.1 | Wheat | nucleus | 29.48 | 18.08 |
| Zm00001d011997_P001 | Maize | nucleus | 30.31 | 17.88 |
| AT5G37750.1 | Thale cress | cytosol | 8.87 | 17.84 |
| AT2G35540.1 | Thale cress | nucleus | 20.82 | 17.12 |
| AT5G18740.1 | Thale cress | nucleus | 15.05 | 16.98 |
| AT3G05110.1 | Thale cress | nucleus | 12.78 | 16.67 |
| AT5G37440.1 | Thale cress | cytosol | 9.48 | 16.03 |
| AT3G06340.4 | Thale cress | cytosol | 21.24 | 15.3 |
| AT5G37380.6 | Thale cress | nucleus | 12.99 | 14.62 |
| AT5G37760.1 | Thale cress | cytosol | 5.98 | 14.01 |
| AT4G19590.2 | Thale cress | nucleus | 10.72 | 13.9 |
| AT4G19580.1 | Thale cress | cytosol | 8.87 | 13.78 |
| AT5G18750.1 | Thale cress | nucleus | 22.47 | 12.33 |
| AT3G06778.1 | Thale cress | cytosol | 5.77 | 12.23 |
| AT3G04960.3 | Thale cress | cytosol | 15.05 | 12.07 |
| AT5G27240.1 | Thale cress | nucleus | 27.22 | 11.96 |
| AT5G18730.1 | Thale cress | cytosol | 12.99 | 11.93 |
| AT4G19570.1 | Thale cress | nucleus | 13.4 | 11.65 |
| AT4G27980.2 | Thale cress | cytosol | 14.02 | 11.28 |
| AT5G62780.1 | Thale cress | cytosol | 4.74 | 11.11 |
| AT3G04980.2 | Thale cress | nucleus | 25.36 | 10.4 |
| AT5G18720.3 | Thale cress | extracellular, golgi | 3.71 | 5.26 |
Protein Annotations
| ArrayExpress:AT5G50115 | EnsemblPlants:AT5G50115.1 | EnsemblPlantsGene:AT5G50115 | EntrezGene:835076 | GO:GO:0008150 | InterPro:DUF3444 |
| PANTHER:PTHR44137 | PFAM:PF11926 | ProteinID:AED95898.1 | RefSeq:AT5G50115 | RefSeq:AT5G50115-TAIR-G | RefSeq:NP_680411.1 |
| SEG:seg | TAIR:AT5G50115 | TAIR:AT5G50115.1 | Unigene:At.55467 | UniParc:UPI0000162852 | UniProt:F4K7J1 |
| MapMan:35.2 | : | : | : | : | : |
Description
CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT5G50510.1); Has 30201 Blast hits to 17322 protei /.../780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G50115]
Coordinates
chr5:+:20379489..20381036
Molecular Weight (calculated)
55164.3 Da
IEP (calculated)
7.000
GRAVY (calculated)
-0.612
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQMDASRKE SIQEEARRAK AVAVEKYNAG DLVGAKEFAV KAHSLDTELG GLRCLNTILD VHMAYEKKIN GEGNWYTVLS ADPTEDLGTI SVRYKKLVRN
101: MIYDRDDSVG GVDETQKILV DAWRYLSKEK LEQAKARKVI PPSRRCVRFN YVETPLNASG PVNQSSSISA GESKRKGPPS TDQFHVHELT RIDNDAGIRH
201: DSLELMPNML GSDLVDKAPS MIKLRIKRSG SSSLDSKKYD AAKRVKINET KNTTHMVNED EYNVVVMSVP DADYYNFDKD RTLASFGENQ VWAAYDDYGM
301: PRWYALVHKI VSQEPFELCI SWLDGKNKGY TGSMKKWIDS GYYKTSGCFT IGKRNVWALY ANWSPSWDIS TSVEEMNKYD MVEVLQDFDE ERGVTVVPLV
401: KVPGFKTVFR RRSNPRTYPR KELFRFSHQV AYQLLTSKKC KNAPTDCLEL DPASLTHELL KVLTEEDERI GINKEEEADL VSGNY
101: MIYDRDDSVG GVDETQKILV DAWRYLSKEK LEQAKARKVI PPSRRCVRFN YVETPLNASG PVNQSSSISA GESKRKGPPS TDQFHVHELT RIDNDAGIRH
201: DSLELMPNML GSDLVDKAPS MIKLRIKRSG SSSLDSKKYD AAKRVKINET KNTTHMVNED EYNVVVMSVP DADYYNFDKD RTLASFGENQ VWAAYDDYGM
301: PRWYALVHKI VSQEPFELCI SWLDGKNKGY TGSMKKWIDS GYYKTSGCFT IGKRNVWALY ANWSPSWDIS TSVEEMNKYD MVEVLQDFDE ERGVTVVPLV
401: KVPGFKTVFR RRSNPRTYPR KELFRFSHQV AYQLLTSKKC KNAPTDCLEL DPASLTHELL KVLTEEDERI GINKEEEADL VSGNY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.