Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039476.1-P | Field mustard | cytosol | 22.31 | 65.53 |
| AT3G05110.1 | Thale cress | nucleus | 31.57 | 51.34 |
| Bra039477.1-P | Field mustard | plastid | 40.5 | 45.54 |
| AT4G27980.2 | Thale cress | cytosol | 42.31 | 42.45 |
| PGSC0003DMT400057888 | Potato | cytosol | 13.22 | 40.4 |
| PGSC0003DMT400089411 | Potato | cytosol | 12.73 | 34.38 |
| CDY27811 | Canola | nucleus | 26.28 | 33.19 |
| CDY41917 | Canola | nucleus | 40.5 | 25.63 |
| Solyc10g007630.1.1 | Tomato | cytosol | 18.84 | 23.46 |
| PGSC0003DMT400054841 | Potato | cytosol | 18.68 | 22.87 |
| AT5G18740.1 | Thale cress | nucleus | 15.54 | 21.86 |
| PGSC0003DMT400057894 | Potato | cytosol | 13.22 | 20.62 |
| AT5G35753.1 | Thale cress | cytosol | 13.88 | 19.58 |
| PGSC0003DMT400057893 | Potato | cytosol | 15.54 | 19.42 |
| KRG92798 | Soybean | cytosol | 21.98 | 18.76 |
| Solyc01g098310.1.1 | Tomato | cytosol | 14.05 | 18.64 |
| Solyc01g098330.1.1 | Tomato | nucleus | 12.23 | 18.05 |
| Solyc08g029220.1.1 | Tomato | nucleus | 23.47 | 18.0 |
| PGSC0003DMT400038431 | Potato | nucleus | 22.98 | 17.66 |
| AT3G06340.4 | Thale cress | cytosol | 19.5 | 17.53 |
| AT5G18730.1 | Thale cress | cytosol | 14.55 | 16.67 |
| AT5G53150.3 | Thale cress | cytosol | 19.34 | 15.5 |
| AT2G25560.1 | Thale cress | cytosol | 16.53 | 15.24 |
| AT2G05250.1 | Thale cress | cytosol | 17.69 | 15.16 |
| AT2G05230.1 | Thale cress | cytosol | 17.69 | 15.16 |
| AT5G50115.1 | Thale cress | cytosol | 12.07 | 15.05 |
| AT2G35540.1 | Thale cress | nucleus | 14.55 | 14.92 |
| AT5G18750.1 | Thale cress | nucleus | 20.66 | 14.14 |
| Solyc01g098250.2.1 | Tomato | nucleus | 22.81 | 13.9 |
| AT5G27240.1 | Thale cress | nucleus | 24.46 | 13.41 |
| Solyc01g098340.2.1 | Tomato | cytosol | 17.36 | 13.12 |
| KRG96896 | Soybean | cytosol | 22.81 | 13.04 |
| KRH68628 | Soybean | cytosol | 22.98 | 13.03 |
| AT5G37750.1 | Thale cress | cytosol | 5.12 | 12.86 |
| PGSC0003DMT400057904 | Potato | nucleus | 22.81 | 12.77 |
| PGSC0003DMT400057887 | Potato | cytosol | 17.52 | 12.59 |
| AT4G19590.2 | Thale cress | nucleus | 7.44 | 12.03 |
| KRH34004 | Soybean | cytosol | 6.28 | 11.95 |
| AT3G04980.2 | Thale cress | nucleus | 22.64 | 11.58 |
| AT5G37440.1 | Thale cress | cytosol | 5.45 | 11.5 |
| AT3G06778.1 | Thale cress | cytosol | 4.3 | 11.35 |
| KRH34003 | Soybean | cytosol | 4.79 | 9.97 |
| AT5G37760.1 | Thale cress | cytosol | 3.31 | 9.66 |
| AT5G37380.6 | Thale cress | nucleus | 6.78 | 9.51 |
| AT5G62780.1 | Thale cress | cytosol | 3.14 | 9.18 |
| AT4G19570.1 | Thale cress | nucleus | 8.26 | 8.96 |
| AT4G19580.1 | Thale cress | cytosol | 4.3 | 8.33 |
| AT5G18720.3 | Thale cress | extracellular, golgi | 2.98 | 5.26 |
Protein Annotations
| MapMan:35.2 | EntrezGene:819656 | UniProt:A0A178VCU8 | ProteinID:AEE74165.1 | ProteinID:AEE74167.1 | ArrayExpress:AT3G04960 |
| EnsemblPlantsGene:AT3G04960 | RefSeq:AT3G04960 | TAIR:AT3G04960 | RefSeq:AT3G04960-TAIR-G | EnsemblPlants:AT3G04960.3 | TAIR:AT3G04960.3 |
| EMBL:BT033143 | ncoils:Coil | InterPro:DUF3444 | UniProt:F4J631 | GO:GO:0003674 | GO:GO:0008150 |
| RefSeq:NP_001078109.1 | RefSeq:NP_187147.2 | ProteinID:OAP02733.1 | PFAM:PF11926 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10825 | PANTHER:PTHR10825:SF4 |
| UniParc:UPI00015056C1 | SEG:seg | : | : | : | : |
Description
Trichohyalin, putative (DUF3444) [Source:UniProtKB/TrEMBL;Acc:F4J631]
Coordinates
chr3:+:1373688..1375989
Molecular Weight (calculated)
70543.9 Da
IEP (calculated)
4.973
GRAVY (calculated)
-0.749
Length
605 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSTERTKFR SMEPATSSPL PRDTSEQDPA LAQSEDQSQG RLRVSAYDLM VVDSDLEGLD QRKEEMRNIF DDIQDKASLI LQFSLKWEEI DDRFGFLKQR
101: AMEKEVSVRN QILELEKKEE RLRLVEERER KIEASFSTLQ EKGNESDLIL LMEANVMRLV LQMQFEQVVV AQLNAQENFL GSLHDSMMKK HEELMTELEA
201: RKNEVALISK TIDAKTCDLD MKVKDFDLKQ TTESERMRKE TELMETSLKQ LEARENELRL LNETIQGKSM ELEKKEVNFQ LKHEAAARET EVKNKFLELK
301: EKKLEEREQH LELKQRKKEK PAIRAETRKR SRLEYESPLS AEKGRYAETL IRPGKKQVQK REAHEIIYID EDEPFNCPDP DFHDFNNTMS SFAVGQVWAL
401: YDPVDDMPRY YAEIRKVLQP QLSLRVTWLE SLQTTEEPIP ACGRFEHGKS ETSSHLMFSH EMYHTIRGQY VTINPRKGET WALFGDWTKT WKSHSEQQKT
501: PYSYDFVEVV TEFDSDRGIG VAYLGRVEGF TSVYERAAQN GLVEIMISCD EMLRFSHRVP SFKMTGDEKE GVPAGSFELD PAAVPRVYLK DAKVKEEKME
601: PIVLV
101: AMEKEVSVRN QILELEKKEE RLRLVEERER KIEASFSTLQ EKGNESDLIL LMEANVMRLV LQMQFEQVVV AQLNAQENFL GSLHDSMMKK HEELMTELEA
201: RKNEVALISK TIDAKTCDLD MKVKDFDLKQ TTESERMRKE TELMETSLKQ LEARENELRL LNETIQGKSM ELEKKEVNFQ LKHEAAARET EVKNKFLELK
301: EKKLEEREQH LELKQRKKEK PAIRAETRKR SRLEYESPLS AEKGRYAETL IRPGKKQVQK REAHEIIYID EDEPFNCPDP DFHDFNNTMS SFAVGQVWAL
401: YDPVDDMPRY YAEIRKVLQP QLSLRVTWLE SLQTTEEPIP ACGRFEHGKS ETSSHLMFSH EMYHTIRGQY VTINPRKGET WALFGDWTKT WKSHSEQQKT
501: PYSYDFVEVV TEFDSDRGIG VAYLGRVEGF TSVYERAAQN GLVEIMISCD EMLRFSHRVP SFKMTGDEKE GVPAGSFELD PAAVPRVYLK DAKVKEEKME
601: PIVLV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.