Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024236.1-P | Field mustard | nucleus | 42.12 | 69.02 |
| CDY29872 | Canola | cytosol | 48.26 | 65.25 |
| CDX92856 | Canola | nucleus | 49.59 | 63.62 |
| AT3G04960.3 | Thale cress | cytosol | 42.45 | 42.31 |
| AT3G05110.1 | Thale cress | nucleus | 26.04 | 42.2 |
| PGSC0003DMT400057888 | Potato | cytosol | 11.28 | 34.34 |
| PGSC0003DMT400089411 | Potato | cytosol | 9.95 | 26.79 |
| Solyc10g007630.1.1 | Tomato | cytosol | 16.75 | 20.78 |
| PGSC0003DMT400054841 | Potato | cytosol | 16.75 | 20.45 |
| AT5G18740.1 | Thale cress | nucleus | 13.76 | 19.3 |
| PGSC0003DMT400057894 | Potato | cytosol | 12.11 | 18.81 |
| PGSC0003DMT400057893 | Potato | cytosol | 13.76 | 17.15 |
| Solyc01g098330.1.1 | Tomato | nucleus | 11.61 | 17.07 |
| AT5G35753.1 | Thale cress | cytosol | 11.77 | 16.55 |
| Solyc01g098310.1.1 | Tomato | cytosol | 12.11 | 16.01 |
| PGSC0003DMT400038431 | Potato | nucleus | 20.23 | 15.5 |
| Solyc08g029220.1.1 | Tomato | nucleus | 20.23 | 15.46 |
| AT5G18730.1 | Thale cress | cytosol | 13.43 | 15.34 |
| KRG92798 | Soybean | cytosol | 17.41 | 14.81 |
| AT5G50115.1 | Thale cress | cytosol | 11.28 | 14.02 |
| AT3G06340.4 | Thale cress | cytosol | 15.09 | 13.52 |
| AT2G25560.1 | Thale cress | cytosol | 14.26 | 13.11 |
| AT2G35540.1 | Thale cress | nucleus | 12.44 | 12.71 |
| AT2G05250.1 | Thale cress | cytosol | 14.43 | 12.32 |
| AT2G05230.1 | Thale cress | cytosol | 14.43 | 12.32 |
| AT5G53150.3 | Thale cress | cytosol | 15.42 | 12.32 |
| AT3G06778.1 | Thale cress | cytosol | 4.64 | 12.23 |
| AT5G18750.1 | Thale cress | nucleus | 17.74 | 12.1 |
| Solyc01g098250.2.1 | Tomato | nucleus | 19.9 | 12.08 |
| PGSC0003DMT400057887 | Potato | cytosol | 15.92 | 11.4 |
| Solyc01g098340.2.1 | Tomato | cytosol | 15.09 | 11.38 |
| AT5G27240.1 | Thale cress | nucleus | 20.73 | 11.32 |
| PGSC0003DMT400057904 | Potato | nucleus | 19.57 | 10.92 |
| KRH68628 | Soybean | cytosol | 19.24 | 10.87 |
| KRG96896 | Soybean | cytosol | 18.41 | 10.49 |
| AT3G04980.2 | Thale cress | nucleus | 20.56 | 10.48 |
| AT5G37750.1 | Thale cress | cytosol | 3.98 | 9.96 |
| AT5G37440.1 | Thale cress | cytosol | 4.15 | 8.71 |
| AT5G37380.6 | Thale cress | nucleus | 6.14 | 8.58 |
| KRH34004 | Soybean | cytosol | 4.15 | 7.86 |
| AT4G19570.1 | Thale cress | nucleus | 6.63 | 7.17 |
| AT4G19590.2 | Thale cress | nucleus | 4.15 | 6.68 |
| AT5G37760.1 | Thale cress | cytosol | 2.16 | 6.28 |
| KRH34003 | Soybean | cytosol | 2.99 | 6.19 |
| AT5G62780.1 | Thale cress | cytosol | 1.82 | 5.31 |
| AT5G18720.3 | Thale cress | extracellular, golgi | 2.99 | 5.26 |
| AT4G19580.1 | Thale cress | cytosol | 2.16 | 4.17 |
Protein Annotations
| ArrayExpress:AT4G27980 | EnsemblPlants:AT4G27980.2 | EnsemblPlantsGene:AT4G27980 | EntrezGene:828911 | InterPro:DUF3444 | ncoils:Coil |
| PANTHER:PTHR10825 | PANTHER:PTHR10825:SF4 | PFAM:PF11926 | ProteinID:ANM66729.1 | ProteinID:OAP00448.1 | RefSeq:AT4G27980 |
| RefSeq:AT4G27980-TAIR-G | RefSeq:NP_001328607.1 | SEG:seg | TAIR:AT4G27980 | Unigene:At.2661 | UniParc:UPI0007E04E50 |
| UniProt:A0A178V490 | UniProt:A0A1P8B553 | MapMan:35.2 | : | : | : |
Description
Domain of unknown function (DUF3444) [Source:TAIR;Acc:AT4G27980]
Coordinates
chr4:+:13921292..13923570
Molecular Weight (calculated)
69606.4 Da
IEP (calculated)
4.533
GRAVY (calculated)
-0.701
Length
603 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKPKVLLVP GEDTPAQKPP LVSTEDQTQE SRVYVSENMA MQGDSVESDV TEQNSEGYLK ILDKIQAKSS SIFEFSLQFD DVVASLEKKE ERLRVVEMKE
101: KEIGLLEESI SRRLSVLEEK EIETDLRLVI EASIMRLVLE KQSEDLVTQL KTEENKLGLF LRSTTKKLEE LVSEFDGRKE EACRVSEKLC ELEKAEKEFH
201: LKQRAETERR NEESEAREKD LRALEEAVKE KTAELKRKEE TLELKMKEEA EKLREETELM RKGLEIKEKT LEKRLKELEL KQMELEETSR PQLVEAESRK
301: RSNLEIEPPL LVKNDSDADS CTPQAKKQKS QEANDGDIEG IVCTDKSYED PNSLTCPDTK LNDFSKSMSS FAVDQVWALY DPRDDMPRNY AQIREIFESQ
401: LSLQVTLLEH VKTTKDEQSI LSGCGRFEYG DTEIKSHLMF AHEMDHIKSA EEVIVNPRKG ETWALFSDWN ASWNSHLELQ ELPYRYDFVE VISEFDDLIG
501: IQVAYMGRVE GYESVFNHAE QYGCIKIVIP PAEMQRFSHK VESVKLSGKE EEGIPFRSFK LNPAAMPRYY HVLEEVVETE IQIKDPTVVH QNGSTKDLPI
601: IID
101: KEIGLLEESI SRRLSVLEEK EIETDLRLVI EASIMRLVLE KQSEDLVTQL KTEENKLGLF LRSTTKKLEE LVSEFDGRKE EACRVSEKLC ELEKAEKEFH
201: LKQRAETERR NEESEAREKD LRALEEAVKE KTAELKRKEE TLELKMKEEA EKLREETELM RKGLEIKEKT LEKRLKELEL KQMELEETSR PQLVEAESRK
301: RSNLEIEPPL LVKNDSDADS CTPQAKKQKS QEANDGDIEG IVCTDKSYED PNSLTCPDTK LNDFSKSMSS FAVDQVWALY DPRDDMPRNY AQIREIFESQ
401: LSLQVTLLEH VKTTKDEQSI LSGCGRFEYG DTEIKSHLMF AHEMDHIKSA EEVIVNPRKG ETWALFSDWN ASWNSHLELQ ELPYRYDFVE VISEFDDLIG
501: IQVAYMGRVE GYESVFNHAE QYGCIKIVIP PAEMQRFSHK VESVKLSGKE EEGIPFRSFK LNPAAMPRYY HVLEEVVETE IQIKDPTVVH QNGSTKDLPI
601: IID
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.