Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G18720.3 | Thale cress | extracellular, golgi | 37.69 | 58.19 |
| AT5G18740.1 | Thale cress | nucleus | 46.4 | 56.98 |
| PGSC0003DMT400057888 | Potato | cytosol | 18.37 | 48.99 |
| PGSC0003DMT400089411 | Potato | cytosol | 16.86 | 39.73 |
| PGSC0003DMT400057894 | Potato | cytosol | 18.37 | 25.0 |
| AT3G05110.1 | Thale cress | nucleus | 15.91 | 22.58 |
| PGSC0003DMT400057893 | Potato | cytosol | 20.64 | 22.52 |
| AT5G18750.1 | Thale cress | nucleus | 37.31 | 22.29 |
| Solyc01g098310.1.1 | Tomato | cytosol | 17.99 | 20.83 |
| Solyc01g098340.2.1 | Tomato | cytosol | 31.25 | 20.62 |
| PGSC0003DMT400057887 | Potato | cytosol | 31.82 | 19.95 |
| AT5G35753.1 | Thale cress | cytosol | 15.91 | 19.58 |
| Solyc10g007630.1.1 | Tomato | cytosol | 17.99 | 19.55 |
| Solyc01g098330.1.1 | Tomato | nucleus | 15.15 | 19.51 |
| PGSC0003DMT400054841 | Potato | cytosol | 17.99 | 19.23 |
| AT3G06340.4 | Thale cress | cytosol | 21.78 | 17.09 |
| Solyc01g098250.2.1 | Tomato | nucleus | 31.82 | 16.92 |
| PGSC0003DMT400057904 | Potato | nucleus | 32.39 | 15.82 |
| KRG92798 | Soybean | cytosol | 20.45 | 15.23 |
| KRH68628 | Soybean | cytosol | 29.55 | 14.62 |
| KRG96896 | Soybean | cytosol | 29.17 | 14.56 |
| AT3G04960.3 | Thale cress | cytosol | 16.67 | 14.55 |
| PGSC0003DMT400038431 | Potato | nucleus | 20.45 | 13.72 |
| Solyc08g029220.1.1 | Tomato | nucleus | 20.27 | 13.56 |
| AT4G27980.2 | Thale cress | cytosol | 15.34 | 13.43 |
| AT5G27240.1 | Thale cress | nucleus | 27.46 | 13.13 |
| AT5G50115.1 | Thale cress | cytosol | 11.93 | 12.99 |
| AT3G04980.2 | Thale cress | nucleus | 26.52 | 11.83 |
| AT5G53150.3 | Thale cress | cytosol | 16.48 | 11.52 |
| AT2G05250.1 | Thale cress | cytosol | 14.96 | 11.19 |
| AT2G05230.1 | Thale cress | cytosol | 14.96 | 11.19 |
| AT2G25560.1 | Thale cress | cytosol | 13.83 | 11.13 |
| AT2G35540.1 | Thale cress | nucleus | 12.12 | 10.85 |
| AT3G06778.1 | Thale cress | cytosol | 3.41 | 7.86 |
| AT5G62780.1 | Thale cress | cytosol | 2.46 | 6.28 |
| AT4G19570.1 | Thale cress | nucleus | 4.92 | 4.66 |
| AT5G37750.1 | Thale cress | cytosol | 2.08 | 4.56 |
| AT5G37440.1 | Thale cress | cytosol | 2.46 | 4.53 |
| AT5G37760.1 | Thale cress | cytosol | 0.95 | 2.42 |
| AT4G19590.2 | Thale cress | nucleus | 1.14 | 1.6 |
| AT5G37380.6 | Thale cress | nucleus | 1.14 | 1.39 |
| KRH34003 | Soybean | cytosol | 0.19 | 0.34 |
| AT4G19580.1 | Thale cress | cytosol | 0.19 | 0.32 |
| KRH34004 | Soybean | cytosol | 0.19 | 0.31 |
Protein Annotations
| ArrayExpress:AT5G18730 | EnsemblPlants:AT5G18730.1 | EnsemblPlantsGene:AT5G18730 | EntrezGene:831991 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF3444 | PANTHER:PTHR45089 | PFAM:PF11926 | ProteinID:AED92604.1 |
| RefSeq:AT5G18730 | RefSeq:AT5G18730-TAIR-G | RefSeq:NP_197374.2 | TAIR:AT5G18730 | TAIR:AT5G18730.1 | Unigene:At.54907 |
| UniParc:UPI00017394F4 | UniProt:F4JY41 | MapMan:35.2 | : | : | : |
Description
CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT5G18740.1); Has 30201 Blast hits to 17322 proteins in 780 /.../es: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G18730]
Coordinates
chr5:+:6246761..6249405
Molecular Weight (calculated)
60622.3 Da
IEP (calculated)
5.064
GRAVY (calculated)
-0.448
Length
528 amino acids
Sequence
(BLAST)
(BLAST)
001: MNAQVGVAMG ISQNLEADNN SFLCDSGSAG AVPQKISGCA GLKFNDFDRL REGVKFEAGQ TWAIYNNTVD QMPRLYAQIR KVSAPCFSLR ITYLEPDPDG
101: EKETQWFEED LPVSVGKFRL GENKSTQDRS IFSHVIHCNE RSNTSCFSIT CRFIDTCHFS VSPRKGETWA LFKNWDIKWS SELDSHRKYE YEFVEILSDY
201: ADEAGVYVAY LHKAKGFASV FFRMGTGYEG IFRILPRSLY RFSHRVPSFK LTGDEGNGVA KDAYELDEAA LPETIEEFIM PSNSESETKS EHQAIYFASE
301: GKVFQTGQIW SFHSGYDDLP LYYGRIQKIT FTQAFKQDPV IKLHISRLKA TRFPEDVINW KYGGMPVGCG TFYARKVQEI ITPSEVSHQI MPQTSMDGIE
401: YTILPKIGEV WAIYRYWSRY IDVDRLEFGL YDIVEILDDT LDYKVQLLTQ QPVSDDRNDM EHRLFRACTE YTSNEDDGSE PIFTIPKTER IRFSNKVPAT
501: RVTKEMYGEL EDNSKVEFRA TPINVIHC
101: EKETQWFEED LPVSVGKFRL GENKSTQDRS IFSHVIHCNE RSNTSCFSIT CRFIDTCHFS VSPRKGETWA LFKNWDIKWS SELDSHRKYE YEFVEILSDY
201: ADEAGVYVAY LHKAKGFASV FFRMGTGYEG IFRILPRSLY RFSHRVPSFK LTGDEGNGVA KDAYELDEAA LPETIEEFIM PSNSESETKS EHQAIYFASE
301: GKVFQTGQIW SFHSGYDDLP LYYGRIQKIT FTQAFKQDPV IKLHISRLKA TRFPEDVINW KYGGMPVGCG TFYARKVQEI ITPSEVSHQI MPQTSMDGIE
401: YTILPKIGEV WAIYRYWSRY IDVDRLEFGL YDIVEILDDT LDYKVQLLTQ QPVSDDRNDM EHRLFRACTE YTSNEDDGSE PIFTIPKTER IRFSNKVPAT
501: RVTKEMYGEL EDNSKVEFRA TPINVIHC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.