Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057888 | Potato | cytosol | 22.33 | 48.48 |
| AT5G18730.1 | Thale cress | cytosol | 56.98 | 46.4 |
| CDY13918 | Canola | nucleus | 52.09 | 39.09 |
| Bra002183.1-P | Field mustard | nucleus | 50.0 | 37.85 |
| PGSC0003DMT400089411 | Potato | cytosol | 19.3 | 37.05 |
| CDX70837 | Canola | mitochondrion | 42.56 | 36.31 |
| Bra006473.1-P | Field mustard | plastid | 48.37 | 29.59 |
| CDX88924 | Canola | plastid | 48.14 | 29.28 |
| PGSC0003DMT400057894 | Potato | cytosol | 21.86 | 24.23 |
| AT3G05110.1 | Thale cress | nucleus | 18.84 | 21.77 |
| PGSC0003DMT400057893 | Potato | cytosol | 24.19 | 21.49 |
| Solyc10g007630.1.1 | Tomato | cytosol | 23.72 | 20.99 |
| PGSC0003DMT400054841 | Potato | cytosol | 23.49 | 20.45 |
| Solyc01g098310.1.1 | Tomato | cytosol | 21.63 | 20.39 |
| Solyc01g098330.1.1 | Tomato | nucleus | 19.3 | 20.24 |
| AT5G35753.1 | Thale cress | cytosol | 19.77 | 19.81 |
| AT3G06340.4 | Thale cress | cytosol | 30.23 | 19.32 |
| KRG92798 | Soybean | cytosol | 29.07 | 17.63 |
| PGSC0003DMT400038431 | Potato | nucleus | 28.84 | 15.76 |
| Solyc08g029220.1.1 | Tomato | nucleus | 28.6 | 15.59 |
| AT3G04960.3 | Thale cress | cytosol | 21.86 | 15.54 |
| AT5G18750.1 | Thale cress | nucleus | 31.16 | 15.16 |
| AT5G50115.1 | Thale cress | cytosol | 16.98 | 15.05 |
| Bra006477.1-P | Field mustard | cytosol | 47.91 | 14.98 |
| CDX70841 | Canola | nucleus | 46.98 | 13.96 |
| Solyc01g098340.2.1 | Tomato | cytosol | 25.81 | 13.88 |
| AT4G27980.2 | Thale cress | cytosol | 19.3 | 13.76 |
| AT2G25560.1 | Thale cress | cytosol | 20.93 | 13.72 |
| PGSC0003DMT400057887 | Potato | cytosol | 26.51 | 13.54 |
| Solyc01g098250.2.1 | Tomato | nucleus | 30.47 | 13.19 |
| AT2G05250.1 | Thale cress | cytosol | 21.4 | 13.03 |
| AT2G05230.1 | Thale cress | cytosol | 21.4 | 13.03 |
| CDX88919 | Canola | cytosol | 47.44 | 12.9 |
| AT5G18720.3 | Thale cress | extracellular, golgi | 10.23 | 12.87 |
| AT5G53150.3 | Thale cress | cytosol | 22.56 | 12.85 |
| AT2G35540.1 | Thale cress | nucleus | 17.21 | 12.54 |
| PGSC0003DMT400057904 | Potato | nucleus | 30.93 | 12.3 |
| KRH68628 | Soybean | cytosol | 30.23 | 12.18 |
| KRG96896 | Soybean | cytosol | 29.77 | 12.1 |
| AT3G06778.1 | Thale cress | cytosol | 5.81 | 10.92 |
| AT5G27240.1 | Thale cress | nucleus | 26.05 | 10.14 |
| AT3G04980.2 | Thale cress | nucleus | 26.05 | 9.47 |
| AT5G37750.1 | Thale cress | cytosol | 4.88 | 8.71 |
| AT5G37760.1 | Thale cress | cytosol | 4.19 | 8.7 |
| AT5G62780.1 | Thale cress | cytosol | 3.95 | 8.21 |
| AT5G37440.1 | Thale cress | cytosol | 5.35 | 8.01 |
| AT4G19590.2 | Thale cress | nucleus | 5.58 | 6.42 |
| KRH34003 | Soybean | cytosol | 3.95 | 5.84 |
| AT5G37380.6 | Thale cress | nucleus | 5.81 | 5.8 |
| AT4G19570.1 | Thale cress | nucleus | 7.44 | 5.73 |
| KRH34004 | Soybean | cytosol | 4.19 | 5.66 |
| AT4G19580.1 | Thale cress | cytosol | 3.95 | 5.45 |
Protein Annotations
| ArrayExpress:AT5G18740 | EnsemblPlants:AT5G18740.1 | EnsemblPlantsGene:AT5G18740 | EntrezGene:831992 | GO:GO:0008150 | InterPro:DUF3444 |
| PANTHER:PTHR45089 | PFAM:PF11926 | ProteinID:AED92605.1 | RefSeq:AT5G18740 | RefSeq:AT5G18740-TAIR-G | RefSeq:NP_197375.4 |
| TAIR:AT5G18740 | TAIR:AT5G18740.1 | Unigene:At.54908 | UniParc:UPI0001A7B163 | UniProt:F4JY42 | MapMan:35.2 |
Description
Domain of unknown function (DUF3444) [Source:TAIR;Acc:AT5G18740]
Coordinates
chr5:+:6249727..6252250
Molecular Weight (calculated)
48281.9 Da
IEP (calculated)
6.081
GRAVY (calculated)
-0.515
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDDTVNELL RRKKAVLNHQ IKSDLVASTL ANHQEKPQAF SLLQQKDVQT KSPGTHFSNC AVKVGEKRKR NECGGICNTE NRSMTEDVVN LSKDRNVDSK
101: RSAFSDNGDA TQEFGSGKQL PEVDCSKDPM SNAQVGAVVG NSRNLEVDQN SGLCDSESGG VVPQKISGFA GLKFNDFDKL REEVNFEVGQ TWAIFDPVDG
201: MPRLYAKIIK VSAPCFGLRI TYLEPDPDGE KELQWFEEDL PVSVGNFRLG ENKCTQDRSI FSHVIHCNEL SNTLCFSVTC RFINTCHFSV SPREGETWAL
301: FKNWDIKWSS EPDSHRKYEY EFVEILSDYA DEAGVYVAYL HKAKGFASVF LRMGTGYEGI FRILPRSLYR FSHRVPSFKL TGVKGKDMPK DAYELDQAAL
401: PETIEEIIVP SNSESNIKSK RQAIYIASKG
101: RSAFSDNGDA TQEFGSGKQL PEVDCSKDPM SNAQVGAVVG NSRNLEVDQN SGLCDSESGG VVPQKISGFA GLKFNDFDKL REEVNFEVGQ TWAIFDPVDG
201: MPRLYAKIIK VSAPCFGLRI TYLEPDPDGE KELQWFEEDL PVSVGNFRLG ENKCTQDRSI FSHVIHCNEL SNTLCFSVTC RFINTCHFSV SPREGETWAL
301: FKNWDIKWSS EPDSHRKYEY EFVEILSDYA DEAGVYVAYL HKAKGFASVF LRMGTGYEGI FRILPRSLYR FSHRVPSFKL TGVKGKDMPK DAYELDQAAL
401: PETIEEIIVP SNSESNIKSK RQAIYIASKG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.