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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plastid 3
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:plastid
Plant-mPloc:mitochondrion, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX88924 Canola plastid 98.44 97.88
Bra006478.1-P Field mustard nucleus 44.52 58.83
Bra006479.1-P Field mustard cytosol 44.67 56.88
Bra002183.1-P Field mustard nucleus 41.68 51.58
AT5G18740.1 Thale cress nucleus 29.59 48.37
PGSC0003DMT400057888 Potato cytosol 12.66 44.95
Bra006476.1-P Field mustard nucleus 34.85 41.67
PGSC0003DMT400089411 Potato cytosol 12.52 39.29
Bra001194.1-P Field mustard cytosol 11.24 39.11
Bra039476.1-P Field mustard cytosol 10.95 37.38
Bra006477.1-P Field mustard cytosol 69.7 35.64
Bra002184.1-P Field mustard cytosol 10.95 29.39
PGSC0003DMT400057894 Potato cytosol 13.94 25.26
GSMUA_Achr5P00460_001 Banana cytosol 23.76 22.97
TraesCS4A01G214500.1 Wheat nucleus 21.76 22.84
GSMUA_Achr11P... Banana nucleus 21.19 22.78
Bra002182.1-P Field mustard nucleus 35.14 22.77
Solyc01g098340.2.1 Tomato cytosol 25.04 22.0
PGSC0003DMT400057893 Potato cytosol 15.08 21.9
Solyc10g007630.1.1 Tomato cytosol 15.08 21.81
Os11t0574200-00 Rice cytosol 10.1 21.71
Solyc01g098310.1.1 Tomato cytosol 14.08 21.71
PGSC0003DMT400054841 Potato cytosol 15.08 21.46
GSMUA_Achr2P02410_001 Banana cytosol 23.61 21.45
PGSC0003DMT400057887 Potato cytosol 25.04 20.9
Bra024236.1-P Field mustard nucleus 10.81 20.65
Solyc01g098330.1.1 Tomato nucleus 11.81 20.24
TraesCS4B01G101500.1 Wheat cytosol 25.32 19.87
Solyc01g098250.2.1 Tomato nucleus 27.74 19.64
Zm00001d040846_P001 Maize cytosol 26.03 19.55
Bra039477.1-P Field mustard plastid 14.94 19.52
KRG92798 Soybean cytosol 19.49 19.32
Bra020757.1-P Field mustard nucleus 17.5 18.84
EER88793 Sorghum cytosol 25.04 18.57
EES00793 Sorghum cytosol 25.75 18.53
PGSC0003DMT400057904 Potato nucleus 28.45 18.5
Os01t0375100-01 Rice nucleus 26.46 18.45
KRH68628 Soybean cytosol 27.88 18.37
KRG96896 Soybean cytosol 27.6 18.34
Os11t0578100-00 Rice cytosol 27.17 18.14
HORVU2Hr1G084660.1 Barley cytosol 21.91 17.7
OQU83710 Sorghum cytosol 24.32 17.56
KXG28768 Sorghum nucleus 24.18 17.44
HORVU4Hr1G043860.4 Barley cytosol 23.47 17.39
Zm00001d052947_P001 Maize plastid 21.19 17.23
TraesCS3A01G213800.3 Wheat nucleus 25.04 17.2
Bra034258.1-P Field mustard cytosol 15.08 17.12
TraesCS3B01G244000.4 Wheat nucleus 25.18 17.12
TraesCS6A01G167100.1 Wheat cytosol 23.76 17.11
TraesCS3D01G215900.1 Wheat nucleus 24.89 17.09
TraesCS2D01G077700.1 Wheat cytosol 20.91 17.03
HORVU2Hr1G013270.2 Barley cytosol 21.05 17.03
HORVU6Hr1G033850.1 Barley cytosol 23.61 17.03
TraesCS2B01G095100.1 Wheat cytosol 20.91 17.01
TraesCS6B01G194500.1 Wheat cytosol 23.61 17.01
Bra041167.1-P Field mustard cytosol, nucleus, plastid 1.56 16.92
TraesCS6D01G155600.1 Wheat cytosol 23.33 16.8
Os06t0535300-01 Rice nucleus 24.32 16.8
TraesCS2A01G347700.1 Wheat mitochondrion 21.91 16.76
Bra009972.1-P Field mustard nucleus 14.94 16.69
TraesCS2B01G366100.1 Wheat cytosol 21.76 16.65
PGSC0003DMT400038431 Potato nucleus 18.63 16.65
TraesCS2A01G084900.1 Wheat nucleus 24.32 16.54
Bra039461.1-P Field mustard cytosol 12.52 16.51
Zm00001d008412_P001 Maize cytosol 23.9 16.49
KXG32106 Sorghum cytosol 23.47 16.32
Solyc08g029220.1.1 Tomato nucleus 18.21 16.22
Zm00001d008413_P001 Maize cytosol 23.47 16.21
HORVU7Hr1G050080.1 Barley nucleus 23.61 16.05
EER98396 Sorghum nucleus 26.03 16.04
HORVU3Hr1G051850.2 Barley nucleus 25.46 15.83
Zm00001d019461_P002 Maize cytosol 25.04 15.77
Bra017315.1-P Field mustard nucleus 10.67 15.72
Bra007790.1-P Field mustard nucleus 13.23 15.71
TraesCS2B01G099600.2 Wheat nucleus 24.32 15.59
TraesCS2D01G082800.1 Wheat nucleus 24.18 15.47
TraesCS1B01G054900.1 Wheat nucleus 25.89 15.27
EES09993 Sorghum nucleus 23.76 15.14
TraesCS1D01G042900.1 Wheat nucleus 25.6 15.1
TraesCS1A01G042500.1 Wheat nucleus 25.46 15.04
OQU83714 Sorghum cytosol, nucleus, plastid 22.19 14.77
EES08665 Sorghum nucleus 14.22 14.73
OQU83709 Sorghum cytosol 24.32 14.72
HORVU1Hr1G008940.2 Barley nucleus 25.04 14.69
Bra035378.1-P Field mustard cytosol 13.66 13.95
TraesCS2A01G080400.1 Wheat cytosol 15.93 13.91
Bra005331.1-P Field mustard nucleus 10.1 13.52
Bra013179.1-P Field mustard nucleus 13.23 13.42
Bra003079.1-P Field mustard cytosol 13.37 13.26
TraesCS2D01G078000.1 Wheat cytosol 11.95 13.06
Bra040290.1-P Field mustard cytosol, mitochondrion 2.99 11.54
Os11t0573800-00 Rice nucleus 14.37 11.0
Bra039474.1-P Field mustard nucleus 21.19 9.76
Bra001216.1-P Field mustard cytosol 3.13 9.73
TraesCS2D01G077900.1 Wheat cytosol 6.26 8.15
KRH34003 Soybean cytosol 3.27 7.9
Bra040300.1-P Field mustard cytosol 4.13 7.86
Bra020958.1-P Field mustard cytosol 1.14 7.84
Bra038959.1-P Field mustard nucleus 4.13 7.53
Bra031906.1-P Field mustard cytosol 0.85 6.52
Bra020957.1-P Field mustard cytosol 1.85 6.31
Bra020956.1-P Field mustard nucleus 2.99 6.02
KRH34004 Soybean cytosol 2.7 5.97
Bra013403.1-P Field mustard nucleus 4.41 5.72
Bra020955.1-P Field mustard cytosol 1.85 4.61
Bra013404.1-P Field mustard nucleus 2.56 4.04
Protein Annotations
EnsemblPlants:Bra006473.1EnsemblPlants:Bra006473.1-PEnsemblPlantsGene:Bra006473InterPro:DUF3444PANTHER:PTHR45089PFAM:PF11926
SEG:segUniParc:UPI000253FECCUniProt:M4CQI4MapMan:19.4.3.1::
Description
AT5G18730 (E=8e-145) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18740.1); Has 299 Blast hits to 137 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 299; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA03:-:3657746..3659857
Molecular Weight (calculated)
79708.2 Da
IEP (calculated)
6.749
GRAVY (calculated)
-0.442
Length
703 amino acids
Sequence
(BLAST)
001: MDLTINAVTE TWIKDTSSPK FWTTCPFCSV CYRLHRSFVS KQTRCRCCNK DFTARETPLQ GLSSKDSTPK RILSQMLRET HQYHPVAPSS SGPSFWTTCR
101: NCGCRHRFLR VYLDKWFVCP SCKEETIAME VLSSSGEVRF SKWFQEFRSM CKNEAASVSG NKSSPGEKRK REEEVAALSQ NHSKPEGAVD KNRRGFNGNG
201: DEASSSGNAK VDNNFGLRDS SSGGGVQPKI AGLKFNDFGK LREEVNFAVG QVWALYDTTD KAPRQYALIR KVSVPSFGLR ITYLEPDPDD EEEIQWFEED
301: LPVSAGQFRL GKNENTKDRS LFSHVIHCNE GGSNSGHFTV SPRKGETWAL FKNWDINWSS ESDSHRRYEY EFVEILSDYT DGAGVYAAIL HKAKGFASVF
401: FPMGTGDADK FYILPHSLYR FYHRIPSFKL TGVDVKGLPK YAYELDQAAL PATIEEVTVP SHLLAEFAPP KPEALCFPIN GKVFKTGQIW SYIGSNDNMP
501: RDYCRIHKIS VTQTFEQAPV YKIVSYRLKA KRLPEEGIIP WEDKKLHVSC GTFLVTKVFA ALAPNNFSHL MVPQASMEGN EYTYTILPKV GQVWAIYRFW
601: NGFLEETYED YVVVEVLDDA LDYKVLALEP ALQFIEEKEG MRVFGAAESR PRDYDDGDEV MFTIPKLKVL RFSHQIGASR VTKEIDGELK ELFELDTAAV
701: PVL
Best Arabidopsis Sequence Match ( AT5G18730.1 )
(BLAST)
001: MNAQVGVAMG ISQNLEADNN SFLCDSGSAG AVPQKISGCA GLKFNDFDRL REGVKFEAGQ TWAIYNNTVD QMPRLYAQIR KVSAPCFSLR ITYLEPDPDG
101: EKETQWFEED LPVSVGKFRL GENKSTQDRS IFSHVIHCNE RSNTSCFSIT CRFIDTCHFS VSPRKGETWA LFKNWDIKWS SELDSHRKYE YEFVEILSDY
201: ADEAGVYVAY LHKAKGFASV FFRMGTGYEG IFRILPRSLY RFSHRVPSFK LTGDEGNGVA KDAYELDEAA LPETIEEFIM PSNSESETKS EHQAIYFASE
301: GKVFQTGQIW SFHSGYDDLP LYYGRIQKIT FTQAFKQDPV IKLHISRLKA TRFPEDVINW KYGGMPVGCG TFYARKVQEI ITPSEVSHQI MPQTSMDGIE
401: YTILPKIGEV WAIYRYWSRY IDVDRLEFGL YDIVEILDDT LDYKVQLLTQ QPVSDDRNDM EHRLFRACTE YTSNEDDGSE PIFTIPKTER IRFSNKVPAT
501: RVTKEMYGEL EDNSKVEFRA TPINVIHC
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT5G18740.1); Has 30201 Blast hits to 17322 proteins in 780 /.../es: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G18730]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.