Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G101500.1 | Wheat | cytosol | 94.78 | 70.87 |
| HORVU4Hr1G043860.4 | Barley | cytosol | 86.57 | 61.12 |
| OQU83710 | Sorghum | cytosol | 52.84 | 36.34 |
| PGSC0003DMT400057888 | Potato | cytosol | 10.15 | 34.34 |
| Bra039476.1-P | Field mustard | cytosol | 10.45 | 33.98 |
| Solyc01g067770.1.1 | Tomato | extracellular, vacuole | 13.73 | 33.7 |
| PGSC0003DMT400089411 | Potato | cytosol | 11.19 | 33.48 |
| Bra001194.1-P | Field mustard | cytosol | 9.7 | 32.18 |
| CDX74108 | Canola | cytosol | 9.7 | 32.18 |
| TraesCS2A01G084900.1 | Wheat | nucleus | 49.55 | 32.11 |
| OQU83714 | Sorghum | cytosol, nucleus, plastid | 49.7 | 31.53 |
| TraesCS3A01G213800.3 | Wheat | nucleus | 47.91 | 31.38 |
| PGSC0003DMT400094016 | Potato | nucleus | 13.58 | 31.06 |
| PGSC0003DMT400058788 | Potato | nucleus | 21.94 | 30.06 |
| CDX70837 | Canola | mitochondrion | 21.64 | 28.77 |
| PGSC0003DMT400086601 | Potato | cytosol | 8.36 | 27.86 |
| Os11t0573800-00 | Rice | nucleus | 37.61 | 27.45 |
| CDX88917 | Canola | nucleus | 13.28 | 26.81 |
| Bra002183.1-P | Field mustard | nucleus | 22.69 | 26.76 |
| CDY13918 | Canola | nucleus | 22.69 | 26.53 |
| Bra006478.1-P | Field mustard | nucleus | 20.6 | 25.94 |
| CDX88918 | Canola | cytosol | 20.6 | 25.94 |
| Bra006479.1-P | Field mustard | cytosol | 20.6 | 25.0 |
| CDX70843 | Canola | extracellular, golgi | 20.15 | 24.95 |
| CDX70840 | Canola | nucleus | 21.19 | 24.32 |
| Bra006476.1-P | Field mustard | nucleus | 20.9 | 23.81 |
| CDX88920 | Canola | nucleus | 20.9 | 23.81 |
| VIT_05s0020g02050.t01 | Wine grape | nucleus | 29.4 | 23.59 |
| Solyc01g098340.2.1 | Tomato | cytosol | 27.46 | 23.0 |
| PGSC0003DMT400057894 | Potato | cytosol | 12.84 | 22.16 |
| TraesCS2A01G347700.1 | Wheat | mitochondrion | 30.3 | 22.09 |
| CDX88924 | Canola | plastid | 22.99 | 21.78 |
| Bra006473.1-P | Field mustard | plastid | 22.84 | 21.76 |
| PGSC0003DMT400057887 | Potato | cytosol | 26.87 | 21.38 |
| PGSC0003DMT400057893 | Potato | cytosol | 15.37 | 21.28 |
| Bra024236.1-P | Field mustard | nucleus | 11.64 | 21.2 |
| PGSC0003DMT400058792 | Potato | nucleus | 28.81 | 21.05 |
| Solyc01g067780.1.1 | Tomato | cytosol | 28.21 | 20.93 |
| TraesCS6A01G167100.1 | Wheat | cytosol | 30.15 | 20.7 |
| KRH21004 | Soybean | nucleus | 29.4 | 20.35 |
| CDX92582 | Canola | nucleus | 25.52 | 20.31 |
| KRH11282 | Soybean | nucleus | 29.25 | 20.25 |
| CDX92586 | Canola | nucleus | 10.45 | 20.0 |
| KRH50936 | Soybean | nucleus | 28.06 | 19.62 |
| Solyc10g007630.1.1 | Tomato | cytosol | 14.03 | 19.34 |
| PGSC0003DMT400054841 | Potato | cytosol | 13.88 | 18.83 |
| TraesCS2A01G080400.1 | Wheat | cytosol | 22.24 | 18.51 |
| Solyc01g098250.2.1 | Tomato | nucleus | 27.01 | 18.23 |
| CDY13919 | Canola | nucleus | 12.54 | 17.8 |
| Solyc01g098310.1.1 | Tomato | cytosol | 12.09 | 17.76 |
| TraesCS1A01G042500.1 | Wheat | nucleus | 31.49 | 17.73 |
| Bra039477.1-P | Field mustard | plastid | 14.18 | 17.66 |
| CDY29872 | Canola | cytosol | 11.64 | 17.49 |
| PGSC0003DMT400057904 | Potato | nucleus | 27.91 | 17.3 |
| KRH02180 | Soybean | cytosol, nucleus, plastid | 26.72 | 17.15 |
| TraesCS3A01G441600.4 | Wheat | cytosol | 19.1 | 17.0 |
| VIT_14s0030g00640.t01 | Wine grape | nucleus | 29.4 | 16.85 |
| CDY19714 | Canola | nucleus | 24.18 | 16.84 |
| Solyc01g098330.1.1 | Tomato | nucleus | 10.3 | 16.83 |
| CDY27811 | Canola | nucleus | 11.94 | 16.7 |
| CDX99992 | Canola | cytosol | 23.13 | 16.47 |
| CDX92856 | Canola | nucleus | 11.04 | 15.74 |
| KRG96896 | Soybean | cytosol | 24.78 | 15.69 |
| CDY08056 | Canola | nucleus | 14.63 | 15.61 |
| CDY41935 | Canola | cytosol | 12.39 | 15.6 |
| Bra009972.1-P | Field mustard | nucleus | 14.63 | 15.58 |
| CDX86172 | Canola | nucleus | 14.63 | 15.58 |
| KRH68628 | Soybean | cytosol | 24.48 | 15.37 |
| CDX80667 | Canola | nucleus | 15.22 | 15.34 |
| CDY27796 | Canola | cytosol | 12.09 | 15.31 |
| CDY27809 | Canola | nucleus | 22.39 | 15.12 |
| CDY24701 | Canola | nucleus | 13.28 | 15.11 |
| Bra039461.1-P | Field mustard | cytosol | 11.94 | 15.01 |
| Bra020757.1-P | Field mustard | nucleus | 14.18 | 14.55 |
| Solyc08g029220.1.1 | Tomato | nucleus | 16.87 | 14.32 |
| TraesCS7A01G033400.1 | Wheat | plastid | 9.55 | 14.19 |
| TraesCS4A01G456000.1 | Wheat | plastid | 9.55 | 14.19 |
| KRG92798 | Soybean | cytosol | 14.93 | 14.1 |
| PGSC0003DMT400038431 | Potato | nucleus | 16.42 | 13.98 |
| CDY05255 | Canola | nucleus | 13.58 | 13.75 |
| CDY13917 | Canola | endoplasmic reticulum, extracellular, mitochondrion | 8.36 | 13.43 |
| Bra002182.1-P | Field mustard | nucleus | 21.64 | 13.36 |
| TraesCS2A01G284200.2 | Wheat | cytosol | 14.33 | 13.1 |
| CDY41919 | Canola | nucleus, plastid | 22.99 | 12.93 |
| TraesCS3A01G536400.1 | Wheat | cytosol | 13.13 | 11.86 |
| TraesCS5A01G493100.1 | Wheat | cytosol | 13.13 | 11.56 |
| CDX70844 | Canola | mitochondrion, plasma membrane | 14.33 | 11.24 |
| Bra006477.1-P | Field mustard | cytosol | 22.84 | 11.13 |
| TraesCS3A01G435100.1 | Wheat | nucleus | 12.69 | 10.75 |
| CDX70841 | Canola | nucleus | 22.84 | 10.57 |
| Bra039474.1-P | Field mustard | nucleus | 22.39 | 9.83 |
| CDX88919 | Canola | cytosol | 21.79 | 9.23 |
| CDY41917 | Canola | nucleus | 12.69 | 8.89 |
| TraesCS4A01G365000.1 | Wheat | cytosol | 2.09 | 5.15 |
| AT4G19590.2 | Thale cress | nucleus | 1.79 | 3.21 |
| CDX74107 | Canola | cytosol | 1.04 | 2.61 |
| KRH34004 | Soybean | cytosol | 1.19 | 2.52 |
| AT5G37760.1 | Thale cress | cytosol | 0.6 | 1.93 |
| KRH34003 | Soybean | cytosol | 0.45 | 1.03 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G214500.1 | EnsemblPlantsGene:TraesCS4A01G214500 | InterPro:DUF3444 | PANTHER:PTHR10825 | PANTHER:PTHR10825:SF38 | PFAM:PF11926 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:512579358..512581370
Molecular Weight (calculated)
75335.3 Da
IEP (calculated)
5.501
GRAVY (calculated)
-0.639
Length
670 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTKHGITNQ QAQTGGNIYS EPTMNATRTD EHRERIDRAS GDEEGNCSET RSDVVQLSAM NQAKSSAPAA GKESVSNLTS AHPDPNFIST QNFRSEDVSL
101: VPNIARSSSL QRLGKRKQDD GPDCSHGTDS SNYKMQRNHD SPSSASEQIS NDNAAVAENQ SAEHHALSSV DSQGGVTASR EANQQSYKEA SGSAPQKLGS
201: PVITYHHPDF FDFGKIRDVN LIAVDQIWAF YDNLDGMPRD YAQVKHIDTS DLRVQLTWLE YNPRNEQEAN WNNKELPVSC GSFCLGGETT TLLQDPSTYL
301: SHRVPLTRGK NGNSYEINPN KGEVWALYKR WSMQWISDPD NCRSYGHDVV EVISDGSTSG DVIVSPLTRI EGFVSLFAQA KDKRFFSIPS SELLRFSHCI
401: PFYRTHENER VGVAEELLEL DTAALPSDLE TAFPSITLNS YMSSELISYP YPESEFHNFE EDRSCEKFES GQIWALYNDA DTFPKVYGWV SKVEIQPFEV
501: HLTWLQACPQ QAQEKLWLGQ NVPVSCGKFK IRSWKAKYGG NHPFSHLVEN SQIDMNWQVK ILPKVGEVWA IYKNWSPDWV PSSNKHTTDY AIGEIVECSK
601: RGTLFSFLTK VDGYVAVFKP DLTKGVLKIP RKENLRFSHR IPSFRLTKEE GGKLRDFYEL DPASVPGDFL
101: VPNIARSSSL QRLGKRKQDD GPDCSHGTDS SNYKMQRNHD SPSSASEQIS NDNAAVAENQ SAEHHALSSV DSQGGVTASR EANQQSYKEA SGSAPQKLGS
201: PVITYHHPDF FDFGKIRDVN LIAVDQIWAF YDNLDGMPRD YAQVKHIDTS DLRVQLTWLE YNPRNEQEAN WNNKELPVSC GSFCLGGETT TLLQDPSTYL
301: SHRVPLTRGK NGNSYEINPN KGEVWALYKR WSMQWISDPD NCRSYGHDVV EVISDGSTSG DVIVSPLTRI EGFVSLFAQA KDKRFFSIPS SELLRFSHCI
401: PFYRTHENER VGVAEELLEL DTAALPSDLE TAFPSITLNS YMSSELISYP YPESEFHNFE EDRSCEKFES GQIWALYNDA DTFPKVYGWV SKVEIQPFEV
501: HLTWLQACPQ QAQEKLWLGQ NVPVSCGKFK IRSWKAKYGG NHPFSHLVEN SQIDMNWQVK ILPKVGEVWA IYKNWSPDWV PSSNKHTTDY AIGEIVECSK
601: RGTLFSFLTK VDGYVAVFKP DLTKGVLKIP RKENLRFSHR IPSFRLTKEE GGKLRDFYEL DPASVPGDFL
001: MNAQVGVAMG ISQNLEADNN SFLCDSGSAG AVPQKISGCA GLKFNDFDRL REGVKFEAGQ TWAIYNNTVD QMPRLYAQIR KVSAPCFSLR ITYLEPDPDG
101: EKETQWFEED LPVSVGKFRL GENKSTQDRS IFSHVIHCNE RSNTSCFSIT CRFIDTCHFS VSPRKGETWA LFKNWDIKWS SELDSHRKYE YEFVEILSDY
201: ADEAGVYVAY LHKAKGFASV FFRMGTGYEG IFRILPRSLY RFSHRVPSFK LTGDEGNGVA KDAYELDEAA LPETIEEFIM PSNSESETKS EHQAIYFASE
301: GKVFQTGQIW SFHSGYDDLP LYYGRIQKIT FTQAFKQDPV IKLHISRLKA TRFPEDVINW KYGGMPVGCG TFYARKVQEI ITPSEVSHQI MPQTSMDGIE
401: YTILPKIGEV WAIYRYWSRY IDVDRLEFGL YDIVEILDDT LDYKVQLLTQ QPVSDDRNDM EHRLFRACTE YTSNEDDGSE PIFTIPKTER IRFSNKVPAT
501: RVTKEMYGEL EDNSKVEFRA TPINVIHC
101: EKETQWFEED LPVSVGKFRL GENKSTQDRS IFSHVIHCNE RSNTSCFSIT CRFIDTCHFS VSPRKGETWA LFKNWDIKWS SELDSHRKYE YEFVEILSDY
201: ADEAGVYVAY LHKAKGFASV FFRMGTGYEG IFRILPRSLY RFSHRVPSFK LTGDEGNGVA KDAYELDEAA LPETIEEFIM PSNSESETKS EHQAIYFASE
301: GKVFQTGQIW SFHSGYDDLP LYYGRIQKIT FTQAFKQDPV IKLHISRLKA TRFPEDVINW KYGGMPVGCG TFYARKVQEI ITPSEVSHQI MPQTSMDGIE
401: YTILPKIGEV WAIYRYWSRY IDVDRLEFGL YDIVEILDDT LDYKVQLLTQ QPVSDDRNDM EHRLFRACTE YTSNEDDGSE PIFTIPKTER IRFSNKVPAT
501: RVTKEMYGEL EDNSKVEFRA TPINVIHC
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT5G18740.1); Has 30201 Blast hits to 17322 proteins in 780 /.../es: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G18730]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.