CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11282	Soybean	nucleus	92.05	92.05
KRH50936	Soybean	nucleus	63.33	63.99
KRH02180	Soybean	cytosol, nucleus, plastid	62.4	57.85
VIT_05s0020g02050.t01	Wine grape	nucleus	46.59	54.01
CDX74107	Canola	cytosol	12.81	46.27
GSMUA_Achr11P...	Banana	nucleus	30.79	45.57
CDY24701	Canola	nucleus	26.14	42.95
CDY13919	Canola	nucleus	20.87	42.8
PGSC0003DMT400058792	Potato	nucleus	40.29	42.53
Solyc01g067770.1.1	Tomato	extracellular, vacuole	11.78	41.76
PGSC0003DMT400058788	Potato	nucleus	21.07	41.72
Bra001194.1-P	Field mustard	cytosol	8.68	41.58
CDX92582	Canola	nucleus	35.64	40.97
AT5G18750.1	Thale cress	nucleus	37.29	40.84
GSMUA_Achr2P02410_001	Banana	cytosol	32.64	40.83
Solyc01g067780.1.1	Tomato	cytosol	37.91	40.64
CDX74108	Canola	cytosol	8.47	40.59
CDY08056	Canola	nucleus	26.24	40.45
KRG89459	Soybean	cytosol	4.55	40.37
Bra020757.1-P	Field mustard	nucleus	26.76	39.66
AT3G06340.4	Thale cress	cytosol	27.27	39.23
CDY05255	Canola	nucleus	26.45	38.67
PGSC0003DMT400086601	Potato	cytosol	7.75	37.31
GSMUA_Achr5P00460_001	Banana	cytosol	27.48	36.59
KRG92798	Soybean	cytosol	25.93	35.4
KRH68628	Soybean	cytosol	38.22	34.68
KRH34004	Soybean	cytosol	11.36	34.59
Zm00001d040846_P001	Maize	cytosol	33.37	34.51
TraesCS6A01G167100.1	Wheat	cytosol	34.71	34.43
TraesCS6B01G194500.1	Wheat	cytosol	34.71	34.43
TraesCS6D01G155600.1	Wheat	cytosol	34.61	34.32
KRG96896	Soybean	cytosol	37.5	34.31
HORVU6Hr1G033850.1	Barley	cytosol	34.4	34.15
Os06t0535300-01	Rice	nucleus	35.54	33.79
EES00793	Sorghum	cytosol	33.88	33.57
KXG32106	Sorghum	cytosol	34.61	33.14
Zm00001d008413_P001	Maize	cytosol	34.71	33.01
Zm00001d008412_P001	Maize	cytosol	34.5	32.78
Os01t0375100-01	Rice	nucleus	34.09	32.74
TraesCS4B01G101500.1	Wheat	cytosol	29.86	32.25
TraesCS3A01G213800.3	Wheat	nucleus	33.47	31.67
KRH34003	Soybean	cytosol	9.5	31.62
EER88793	Sorghum	cytosol	30.79	31.43
TraesCS3D01G215900.1	Wheat	nucleus	33.16	31.35
TraesCS3B01G244000.4	Wheat	nucleus	33.37	31.24
Os11t0578100-00	Rice	cytosol	33.68	30.96
HORVU4Hr1G043860.4	Barley	cytosol	29.24	29.82
Os11t0574200-00	Rice	cytosol	10.02	29.66
TraesCS4A01G214500.1	Wheat	nucleus	20.35	29.4
OQU83710	Sorghum	cytosol	29.55	29.36
EER98396	Sorghum	nucleus	34.5	29.27
Zm00001d019461_P002	Maize	cytosol	33.68	29.21
TraesCS2A01G084900.1	Wheat	nucleus	31.2	29.21
HORVU7Hr1G050080.1	Barley	nucleus	31.2	29.21
EES09993	Sorghum	nucleus	33.26	29.19
KXG28768	Sorghum	nucleus	28.93	28.72
KRH64496	Soybean	nucleus	20.45	28.61
HORVU3Hr1G051850.2	Barley	nucleus	33.16	28.38
KRH53452	Soybean	cytosol	20.25	28.32
TraesCS1B01G054900.1	Wheat	nucleus	34.5	28.02
EES08665	Sorghum	nucleus	19.63	27.98
TraesCS1D01G042900.1	Wheat	nucleus	34.19	27.77
TraesCS2B01G099600.2	Wheat	nucleus	31.3	27.62
TraesCS1A01G042500.1	Wheat	nucleus	33.78	27.48
KRH74334	Soybean	cytosol, nucleus	15.81	27.27
HORVU1Hr1G008940.2	Barley	nucleus	33.68	27.21
TraesCS2D01G082800.1	Wheat	nucleus	30.58	26.93
KRH37055	Soybean	cytosol	7.44	26.67
KRH18160	Soybean	nucleus	21.18	26.59
KRH16532	Soybean	cytosol	20.97	26.36
KRH12028	Soybean	cytosol	7.33	26.3
KRH39596	Soybean	nucleus	15.7	26.25
KRH09248	Soybean	nucleus	20.76	25.8
KRH14137	Soybean	nucleus	18.8	25.74
KRH73997	Soybean	nucleus	18.59	25.53
OQU83709	Sorghum	cytosol	30.58	25.47
TraesCS2B01G095100.1	Wheat	cytosol	22.73	25.46
Zm00001d052947_P001	Maize	plastid	22.73	25.43
KRH38748	Soybean	nucleus	21.28	25.37
HORVU2Hr1G084660.1	Barley	cytosol	22.62	25.17
TraesCS2B01G366100.1	Wheat	cytosol	23.86	25.14
HORVU2Hr1G013270.2	Barley	cytosol	22.31	24.86
TraesCS2A01G347700.1	Wheat	mitochondrion	23.55	24.81
TraesCS2D01G077700.1	Wheat	cytosol	22.11	24.8
KRH50796	Soybean	cytosol, nucleus, peroxisome	6.2	24.1
KRH54176	Soybean	nucleus	19.73	24.09
KRH63773	Soybean	nucleus	20.14	23.99
KRH02299	Soybean	cytosol	6.61	23.88
Os11t0573800-00	Rice	nucleus	21.59	22.77
TraesCS2A01G080400.1	Wheat	cytosol	18.08	21.74
TraesCS2D01G078000.1	Wheat	cytosol	13.84	20.84
OQU83714	Sorghum	cytosol, nucleus, plastid	22.0	20.17
TraesCS2D01G077900.1	Wheat	cytosol	8.78	15.74

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100779228	MapMan:35.2	EMBL:ACUP02008333	InterPro:DUF3444	InterPro:DnaJ_domain
EnsemblPlantsGene:GLYMA_13G214300	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:K7M117	EnsemblPlants:KRH21004
ProteinID:KRH21004	ProteinID:KRH21004.1	ProteinID:KRH21005.1	ProteinID:KRH21006.1	PFAM:PF00226	PFAM:PF11926
PRINTS:PR00625	PFscan:PS50076	PANTHER:PTHR45089	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000233C5FF
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:32769353..32774423

Molecular Weight (calculated)

110526.0 Da

IEP (calculated)

6.486

GRAVY (calculated)

-0.749

Length

968 amino acids

Sequence
(BLAST)

001: MECNKEEAIR AKELAEKKMQ NKDFNGARKF AIKAQQLYPD LENITQMLIV CDVHCSAEQK LFSNEMDWYK ILQIELTAND TTIKKQYRKF ALQLHPDKNK
101: FAGAEAAFKL IGEAQRVLLD REKRSRLDMN LRRVPMNRTT MPSHHQQNVQ MNFNPVMQTS VRPNFTNLNP QQPQPSRQAS QQVPNGGCPT FWTVCSFCSV
201: RYEYYREVLN RSLRCQHCSR PFIAYDVNMQ GTTPATNSSQ QAFGVQNHSQ NHGAFNVGAG SQGNLHTRRS NTESHKKKGP TADVSVKPNG KRKRKQVAES
301: SESAESVGST DSESEEDILY DKDGFSTLRE ENPRRSTRQK HQVSYNENVS DDDEGGGSPS GAGENTGEPS KMNNQNGLAA DLKGNKQGEK RKQNFYSEES
401: LQNIDEEIKE VREKEAVGSS KIDKASEHSP SKSTNRPDDF VYPDAEFSDF DKDKKEGSFA VGQIWAIYDT IDGMPRFYAV IRKVFSPGFK LRITWFEPDP
501: DEQDQVHWVE EELPIACGKH KLGITDTTED RLMFSHLIVC EKIGRCTYKV YPRKGETWAL FKNWDIKWHM DAESHREYDF EFVEILSDYV EGVGVVVSYL
601: AKLKGFVCLF SRMEGGNRTF QIPSSELFRF SHRVPSFKMT GQERAGVPVG SYELDPVSLP MNLEEIAVPE HLEVKDGHCP SSGVGTRSSD MWKFTMNSEG
701: DASTAKVKLQ RNNSAEENKD PVNHIGNDSD PSASAADAFE IPDPEFCNFD AKRSLEMFQV GQIWAFYGDE DGLPKYYGHI KKVRTSPDLE LQVTYLTNCW
801: LPEKCVKWED KDMLISIGRF KIKAGAHPCT YANTYYVSHQ VQVINDGKKK EYEIFPRKGE IWALYRNWTT KIKRSDLLNL EYDIVEVVGE QDLWMDVLPL
901: ELVSGYNSVF KRKSNAGSAR ATKIYWKDLL RFSHQIPAFE LTEEQDGNLR GFWELDPGAV PLHYFNSK

Best Arabidopsis Sequence Match ( AT5G18750.1 )
(BLAST)

001: MSNKDEALRA KDLAEDWMSK SDFTTARRIA IKAQKMDATL ESVVARMIMV CDVHCAALEK SGDETDWYKI LQVEQTADEN TIKKQYKKLA LHLHPDKNKL
101: PGAESAFKTI GEAQRVLLDK DKRRFHDMRR KPVFRRPAPA PAPAPSFQPP QQAPTTPFFT QRGFQTNVNV ARKRPENQKK PQAQPTGFDG LASFTTSCAF
201: CHRKYEYQRK LINTLMTCLN CGKQYVAFQE TFQPPVQPTF SFFQQSKVPT QEAGKAVEKQ PESCAKSFFS KEGSRAKSSG VSAENINGKR KRKKVVESSD
301: SSCSESSIDC NEVPAGGQDS GSSGAQHSRR SVRSKQQVSY KEDKEEDAES AEESDFRKKS HEDQPFTETL PNGLNRTKKS KAAKNSSSGS ASDAEIQCTD
401: PDFSNFEKSR EVTCFKAGQT WAIYDDMGGM PRYYAIIRKV IRKPSFMLKI QWLEAEPDDE KANLWVRKNL PISIGKFKLG GNENIEKTPC FSHMIYFKVG
501: SMKDTVRVYP RIGETWALFK NWDINWSSGR RRSSHEHEYE YEFVEILSEY VEGVAIQVAF LRKIKGFTSV FCRIAPGGGS DTIQIPPHEL LRFSHSIPST
601: KLTGKEGNGV PIGSYEFDTA ALPQKIEQEE AVPVLRESAK LNQVNHNSPP SSEPDCIVIP NFQFNNFSAE RLEGKFAPGQ IWSLNSKEDG LPKCYAKIQQ
701: IVWRPVFKLQ INRLEPKSLL ENVIQWHDKR MPVSCGNFTL KEGRDETLTK VTDFSHQIKA EKHFRINEYI VVPKTGEIWA MYKNWSETIK ATSLKRCEYE
801: VVEVLDDNDS HIEVMLLEQV DGFISVFKEK LEGGIDVKKK IPRCELLRFS HYVPAFRLTG ERDGALRGYV ELDPSAFPLN LRRS

Arabidopsis Description

DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q3E9D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.