CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89459	Soybean	cytosol	18.31	97.25
KRH74334	Soybean	cytosol, nucleus	89.64	92.51
VIT_02s0012g02290.t01	Wine grape	nucleus	55.09	53.98
GSMUA_Achr4P05630_001	Banana	cytosol	43.18	49.8
CDY32121	Canola	nucleus	33.16	41.29
Bra017315.1-P	Field mustard	nucleus	33.68	40.88
Zm00001d045553_P001	Maize	cytosol	33.33	40.55
CDY40464	Canola	nucleus	33.51	40.42
TraesCS7A01G033400.1	Wheat	plastid	30.92	39.69
EES11310	Sorghum	cytosol, plastid	33.68	39.63
HORVU7Hr1G005730.1	Barley	cytosol	30.22	39.15
Os06t0111700-01	Rice	nucleus	32.12	38.91
TraesCS4A01G456000.1	Wheat	plastid	30.22	38.8
AT2G35540.1	Thale cress	nucleus	39.38	38.64
Bra005331.1-P	Field mustard	nucleus	34.89	38.48
CDY51818	Canola	nucleus	25.73	37.63
KXG19130	Sorghum	cytosol	31.43	35.97
PGSC0003DMT400047612	Potato	nucleus	46.8	29.55
Solyc08g005300.1.1	Tomato	nucleus	46.46	29.5
KRH64496	Soybean	nucleus	29.88	25.0
KRH73997	Soybean	nucleus	30.22	24.82
KRH14137	Soybean	nucleus	30.22	24.75
KRH53452	Soybean	cytosol	29.36	24.57
KRH09248	Soybean	nucleus	31.78	23.62
KRH34004	Soybean	cytosol	12.61	22.96
KRH18160	Soybean	nucleus	30.4	22.83
KRH16532	Soybean	cytosol	30.22	22.73
KRH34003	Soybean	cytosol	11.4	22.68
KRH38748	Soybean	nucleus	31.78	22.66
KRH12028	Soybean	cytosol	10.19	21.85
KRH37055	Soybean	cytosol	10.19	21.85
KRH63773	Soybean	nucleus	29.02	20.66
KRH50796	Soybean	cytosol, nucleus, peroxisome	8.81	20.48
KRH54176	Soybean	nucleus	27.98	20.43
KRG92798	Soybean	cytosol	24.18	19.75
KRH02299	Soybean	cytosol	8.98	19.4
KRH11282	Soybean	nucleus	26.77	16.01
KRH21004	Soybean	nucleus	26.25	15.7
KRH50936	Soybean	nucleus	25.22	15.24
KRH02180	Soybean	cytosol, nucleus, plastid	25.22	13.98
KRG96896	Soybean	cytosol	25.39	13.89
KRH68628	Soybean	cytosol	25.22	13.68

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100814434	MapMan:35.2	EMBL:ACUP02005944	ncoils:Coil	InterPro:DUF3444
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlantsGene:GLYMA_09G208400	UniProt:I1L515	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	EnsemblPlants:KRH39596	ProteinID:KRH39596	ProteinID:KRH39596.1	PFAM:PF00226	PFAM:PF11926
PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44137	SMART:SM00271	SUPFAM:SSF46565
UniParc:UPI0002337FD6	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:43279305..43281773

Molecular Weight (calculated)

65543.2 Da

IEP (calculated)

9.107

GRAVY (calculated)

-0.709

Length

579 amino acids

Sequence
(BLAST)

001: MAEAESEALR LKAMAESKFK GSNNNAKSAL KYAKRAHRLC PHLAGVSETV AALSVLAAPD WYRALGAEPF ASSSVIRRQY KKLALLLHPD KNPHVASEEA
101: FKLLGEAFSF LSDRNRRREY DAKLRRKIEA AEIESETFWT ACSTCRLLHQ FERKYLGQEL VCPSCEKSFR AVEAAQSDDD DDDDDGDIRV RSRRLKLKEM
201: EKREIGVKGK VGGEKGNELG SEKEGRLRKR MCSVGEVLER AKQSNSKRVK NGEEMMTLAE FQNQVKRKLQ EGKLKEKEKE KEKEKEEEGI EKRRNPAERR
301: RRRLGLRNNG GLEAGEVRGL KKSVKPAIEE KRKGLIIEKH RGGSSGGELE TMAVVDSDFY DFDKDRVGRS FKKGQVWAVY DDDDGMPRNY ALIDETVSVN
401: PFGVRISWLD VQNSGDGRIV SREKMEFHIP CGRFKVARRK ASVNSVNIFS HVVDCDRAAR EVYKIYPKKG SVWMLYGEGS IDADEGKGCY DIVVFLTSYN
501: EVNGLSMAHL EKVDGYKTVF KRLERGSGAI RFLGKDDMWL VSHQIPARKL LCDETPELLK DCWELDPASL PSDLLTIGG

Best Arabidopsis Sequence Match ( AT2G35540.1 )
(BLAST)

001: MASGSDSEVE KESIHHKALA ESSFNCGDLM SALTHARKAL SLSPNTEGLS AMVTAFEIIS SAATVAGGFP EWYKVLKVEP FSHINTIKQQ YRKLALVLHP
101: DKNPYVGCEE GFKLLNEAFR VFSDKVRRTE YDMKLRIRIQ GEMVSGGSGG DETSTFSAVC SGCRSVHKFD RKYLGQNLMC PTCKNSFEAK EVEKEEEGRE
201: NGACTSKIIT YSRRKRPVDS DGESLIKEVE TGEMSQEAAE AINVFEGSDE EDEGMMTLAE MQAVIKRNKS KVNSKITEKD SSGEENMGRE TQKRSLADAS
301: MTETLREMST NAVNNKQEVL KNRKNIKKKK MANHKDLTEI VDLEYVPRVD RKRDRGKLSQ EMYMEDEDFE LYDFDKDRMP RSFKKGQIWA IYDGGDDKMP
401: RSYCLVSEVV SLNPFKVWIS WLDFESEKLI SWMKISSSHM PCGRFRVSEK ALIEQVKPFS HLVNCERAAR EIYQIYPKKG SVWAVYSETN PGLQRRKTRR
501: YEIVVCLTMY TDAYGLSVAY LEKVNDYSNL FKRRDYGYNA VRWVEKEDVA ALLSHQIPAK KLPEDESGAD LKESWVLDLA SVPPDLVSAT

Arabidopsis Description

DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IKR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.