Factsheet for PGSC0003DMT400047612

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g005300.1.1	Tomato	nucleus	87.9	88.38
VIT_02s0012g02290.t01	Wine grape	nucleus	33.59	52.12
KRH74334	Soybean	cytosol, nucleus	29.23	47.77
KRH39596	Soybean	nucleus	29.55	46.8
GSMUA_Achr4P05630_001	Banana	cytosol	25.3	46.22
AT2G35540.1	Thale cress	nucleus	27.26	42.37
Bra005331.1-P	Field mustard	nucleus	23.99	41.9
CDY32121	Canola	nucleus	21.16	41.72
Bra017315.1-P	Field mustard	nucleus	21.7	41.72
CDY40464	Canola	nucleus	21.7	41.46
Os06t0111700-01	Rice	nucleus	20.07	38.49
HORVU7Hr1G005730.1	Barley	cytosol	18.76	38.48
TraesCS7A01G033400.1	Wheat	plastid	18.87	38.36
Zm00001d045553_P001	Maize	cytosol	19.74	38.03
CDY51818	Canola	nucleus	16.14	37.37
TraesCS4A01G456000.1	Wheat	plastid	18.32	37.25
EES11310	Sorghum	cytosol, plastid	19.85	36.99
PGSC0003DMT400057888	Potato	cytosol	7.74	35.86
KXG19130	Sorghum	cytosol	18.32	33.2
PGSC0003DMT400039473	Potato	nucleus	5.34	33.11
PGSC0003DMT400092645	Potato	cytosol	4.03	28.68
PGSC0003DMT400089411	Potato	cytosol	6.76	27.68
PGSC0003DMT400085016	Potato	cytosol	3.71	26.15
PGSC0003DMT400085685	Potato	plastid	4.58	24.56
PGSC0003DMT400086295	Potato	mitochondrion	5.67	23.85
PGSC0003DMT400054841	Potato	cytosol	12.76	23.68
PGSC0003DMT400023514	Potato	cytosol	18.87	23.54
PGSC0003DMT400097263	Potato	cytosol	3.71	23.45
PGSC0003DMT400094974	Potato	cytosol	6.98	23.44
PGSC0003DMT400039476	Potato	nucleus	19.08	21.74
PGSC0003DMT400059130	Potato	cytosol	18.21	21.47
PGSC0003DMT400092668	Potato	cytosol	3.38	20.95
PGSC0003DMT400086601	Potato	cytosol	4.58	20.9
PGSC0003DMT400038431	Potato	nucleus	17.78	20.71
PGSC0003DMT400057893	Potato	cytosol	10.69	20.25
PGSC0003DMT400015678	Potato	nucleus	16.79	19.54
PGSC0003DMT400048481	Potato	cytosol	16.68	19.54
PGSC0003DMT400003010	Potato	nucleus	5.34	19.29
PGSC0003DMT400092747	Potato	cytosol	5.13	19.11
PGSC0003DMT400094007	Potato	extracellular, plasma membrane	5.89	18.95
PGSC0003DMT400057894	Potato	cytosol	7.63	18.04
PGSC0003DMT400058792	Potato	nucleus	15.59	15.59
PGSC0003DMT400057904	Potato	nucleus	17.88	15.17
PGSC0003DMT400080343	Potato	cytosol	8.83	13.13
PGSC0003DMT400096427	Potato	cytosol	8.62	12.85
PGSC0003DMT400058788	Potato	nucleus	6.11	11.45
PGSC0003DMT400057887	Potato	cytosol	9.38	10.21
PGSC0003DMT400094016	Potato	nucleus	2.94	9.22

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:102582811	MapMan:35.2	ncoils:Coil	InterPro:DUF3444	InterPro:DnaJ_domain
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:M1BL35	PFAM:PF00226	PFAM:PF11926
EnsemblPlantsGene:PGSC0003DMG400018503	PGSC:PGSC0003DMG400018503	EnsemblPlants:PGSC0003DMT400047612	PRINTS:PR00625	PFscan:PS50076	PANTHER:PTHR44137
SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000296B413	RefSeq:XP_006361259.2	RefSeq:XP_006361260.2	RefSeq:XP_015170676.1
SEG:seg	:	:	:	:	:

Description

DnaJ domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018503]

Coordinates

chr8:-:3971115..3975813

Molecular Weight (calculated)

104036.0 Da

IEP (calculated)

6.275

GRAVY (calculated)

-0.923

Length

917 amino acids

Sequence
(BLAST)

001: MAADEEKPQA EAEAEAGDQP EALRLKALAE QKYNSGNLKS ALKYAKRAHS LYPAVDGVSE MLTAFKILHT GTVPAETPVA PTAGDAATIT TTLPDYYKIL
101: QIERFSHINT IKKQYRKLAL TLHPDKNPFA ASEEAFKVVG EAFRVLSDKI RRKEYDVKLR VAMQSAVMAE EGETTTFWTA CSTCRLLHQF EKKYLGHNLM
201: CPSCKETFEA IEVPENGDNE EGCEGLMETR GSARIKTRKS ESFGSSRNSE LGRKRKVGSV TEVNKRPHGK TTRNDDAIGV GTEVDMEGDV ESDDGLIKEL
301: RSKINGKVRS VGEGEDTMTL AEMQLLVKKK VNKGKIPVKD KGEESEKSKE MDLIEKEDDV EMEMLIARVR EKRMRREALK GDGSEDGGRR MDLSSNRGGK
401: GLRQDESEIM AENGKEENEK ATVLNLTEKD REKRKEMTSS LTAEEDEDEV EMETLIARVR DKRMRREALK GDSLENGGRR RDDLSSNRGG KGLRQDDSER
501: MVENGKEENE KATTLNLKDK DREKRKEMTS SLTKDEDEDE GEDEVEMETL MARVREKRMR RAALKGDGLQ DGGRRRDLSS KRCGKGSRQD DSEIMAENEK
601: TMRLNLMEKE SEERKETNLS LIEEEDEVEM ESPIARVREK RIRREVLKAD GLENGERRRN SRIKKVTLSK SNKKDKGPRQ DDLEKAEENF DLYNFDKDRV
701: ARSFKKGHVW AVYDDDGMPR DYALIDDVIS AHPFEVRLNW LEFQSNSDEA LLHWGKKGFH ISCGKFKVSR QALVKSLKKF SHVVDSERAA RELYRIYPSK
801: GSVWALYKEN ALGTGSSSLM EDNQCYDIVI SLSSYTDLHG VSVAYLERVD GFRTIFKRRE VGAHAVKLLG KDELRLFSHR ISARKLSDEE ASNISKNCWE
901: LDHASLPREL LAINGGS

Best Arabidopsis Sequence Match ( AT2G35540.1 )
(BLAST)

001: MASGSDSEVE KESIHHKALA ESSFNCGDLM SALTHARKAL SLSPNTEGLS AMVTAFEIIS SAATVAGGFP EWYKVLKVEP FSHINTIKQQ YRKLALVLHP
101: DKNPYVGCEE GFKLLNEAFR VFSDKVRRTE YDMKLRIRIQ GEMVSGGSGG DETSTFSAVC SGCRSVHKFD RKYLGQNLMC PTCKNSFEAK EVEKEEEGRE
201: NGACTSKIIT YSRRKRPVDS DGESLIKEVE TGEMSQEAAE AINVFEGSDE EDEGMMTLAE MQAVIKRNKS KVNSKITEKD SSGEENMGRE TQKRSLADAS
301: MTETLREMST NAVNNKQEVL KNRKNIKKKK MANHKDLTEI VDLEYVPRVD RKRDRGKLSQ EMYMEDEDFE LYDFDKDRMP RSFKKGQIWA IYDGGDDKMP
401: RSYCLVSEVV SLNPFKVWIS WLDFESEKLI SWMKISSSHM PCGRFRVSEK ALIEQVKPFS HLVNCERAAR EIYQIYPKKG SVWAVYSETN PGLQRRKTRR
501: YEIVVCLTMY TDAYGLSVAY LEKVNDYSNL FKRRDYGYNA VRWVEKEDVA ALLSHQIPAK KLPEDESGAD LKESWVLDLA SVPPDLVSAT

Arabidopsis Description

DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IKR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.