CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02180	Soybean	cytosol, nucleus, plastid	92.07	84.48
KRH21004	Soybean	nucleus	63.99	63.33
KRH11282	Soybean	nucleus	63.26	62.6
VIT_05s0020g02050.t01	Wine grape	nucleus	45.82	52.57
CDX74107	Canola	cytosol	13.05	46.64
Bra001194.1-P	Field mustard	cytosol	9.39	44.55
CDY24701	Canola	nucleus	27.35	44.48
GSMUA_Achr11P...	Banana	nucleus	30.17	44.19
CDX74108	Canola	cytosol	9.29	44.06
CDY08056	Canola	nucleus	28.6	43.63
CDY13919	Canola	nucleus	20.77	42.16
Solyc01g067770.1.1	Tomato	extracellular, vacuole	12.0	42.12
PGSC0003DMT400058792	Potato	nucleus	39.77	41.55
AT3G06340.4	Thale cress	cytosol	29.02	41.31
KRG89459	Soybean	cytosol	4.7	41.28
CDY05255	Canola	nucleus	28.39	41.09
Bra020757.1-P	Field mustard	nucleus	27.97	41.04
CDX92582	Canola	nucleus	35.28	40.14
AT5G18750.1	Thale cress	nucleus	36.64	39.71
Solyc01g067780.1.1	Tomato	cytosol	37.37	39.65
GSMUA_Achr2P02410_001	Banana	cytosol	31.52	39.02
PGSC0003DMT400058788	Potato	nucleus	19.62	38.45
GSMUA_Achr5P00460_001	Banana	cytosol	26.93	35.49
KRG92798	Soybean	cytosol	26.2	35.4
PGSC0003DMT400086601	Potato	cytosol	7.1	33.83
Zm00001d040846_P001	Maize	cytosol	32.78	33.55
Os06t0535300-01	Rice	nucleus	35.39	33.3
TraesCS6B01G194500.1	Wheat	cytosol	33.92	33.3
TraesCS6A01G167100.1	Wheat	cytosol	33.82	33.2
TraesCS6D01G155600.1	Wheat	cytosol	33.72	33.09
KRH34004	Soybean	cytosol	10.96	33.02
EES00793	Sorghum	cytosol	33.51	32.86
HORVU6Hr1G033850.1	Barley	cytosol	33.3	32.72
KRH34003	Soybean	cytosol	9.92	32.65
Os01t0375100-01	Rice	nucleus	34.13	32.44
KRH68628	Soybean	cytosol	35.91	32.24
KRG96896	Soybean	cytosol	35.59	32.23
Zm00001d008413_P001	Maize	cytosol	34.13	32.12
EER88793	Sorghum	cytosol	31.73	32.07
Zm00001d008412_P001	Maize	cytosol	33.72	31.7
TraesCS4B01G101500.1	Wheat	cytosol	29.65	31.7
TraesCS3A01G213800.3	Wheat	nucleus	33.51	31.38
KXG32106	Sorghum	cytosol	32.99	31.26
TraesCS3D01G215900.1	Wheat	nucleus	33.3	31.15
Os11t0578100-00	Rice	cytosol	34.13	31.05
TraesCS3B01G244000.4	Wheat	nucleus	33.19	30.75
HORVU4Hr1G043860.4	Barley	cytosol	29.75	30.03
EES09993	Sorghum	nucleus	33.92	29.47
EER98396	Sorghum	nucleus	35.07	29.45
Zm00001d019461_P002	Maize	cytosol	34.24	29.39
OQU83710	Sorghum	cytosol	29.75	29.26
KXG28768	Sorghum	nucleus	29.75	29.23
TraesCS2A01G084900.1	Wheat	nucleus	31.32	29.01
HORVU3Hr1G051850.2	Barley	nucleus	33.92	28.74
HORVU7Hr1G050080.1	Barley	nucleus	31.0	28.72
KRH37055	Soybean	cytosol	8.04	28.52
Os11t0574200-00	Rice	cytosol	9.71	28.44
KRH64496	Soybean	nucleus	20.46	28.32
KRH12028	Soybean	cytosol	7.93	28.15
EES08665	Sorghum	nucleus	19.94	28.13
TraesCS4A01G214500.1	Wheat	nucleus	19.62	28.06
KRH53452	Soybean	cytosol	20.25	28.03
TraesCS1B01G054900.1	Wheat	nucleus	34.55	27.77
TraesCS1D01G042900.1	Wheat	nucleus	34.24	27.52
HORVU1Hr1G008940.2	Barley	nucleus	34.34	27.46
TraesCS1A01G042500.1	Wheat	nucleus	34.03	27.39
TraesCS2D01G082800.1	Wheat	nucleus	31.32	27.3
TraesCS2B01G099600.2	Wheat	nucleus	31.11	27.16
KRH73997	Soybean	nucleus	19.52	26.52
KRH18160	Soybean	nucleus	21.29	26.46
KRH14137	Soybean	nucleus	19.42	26.31
KRH16532	Soybean	cytosol	21.09	26.23
KRH74334	Soybean	cytosol, nucleus	15.14	25.85
KRH09248	Soybean	nucleus	20.98	25.8
KRH02299	Soybean	cytosol	7.2	25.75
KRH50796	Soybean	cytosol, nucleus, peroxisome	6.68	25.7
KRH38748	Soybean	nucleus	21.5	25.37
KRH39596	Soybean	nucleus	15.24	25.22
HORVU2Hr1G084660.1	Barley	cytosol	22.76	25.06
OQU83709	Sorghum	cytosol	30.38	25.04
TraesCS2B01G095100.1	Wheat	cytosol	22.55	25.0
KRH63773	Soybean	nucleus	21.19	24.97
KRH54176	Soybean	nucleus	20.56	24.84
Zm00001d052947_P001	Maize	plastid	22.34	24.74
TraesCS2B01G366100.1	Wheat	cytosol	23.49	24.48
HORVU2Hr1G013270.2	Barley	cytosol	22.13	24.4
TraesCS2A01G347700.1	Wheat	mitochondrion	23.38	24.37
TraesCS2D01G077700.1	Wheat	cytosol	21.71	24.1
Os11t0573800-00	Rice	nucleus	21.71	22.66
TraesCS2A01G080400.1	Wheat	cytosol	17.75	21.12
TraesCS2D01G078000.1	Wheat	cytosol	13.57	20.22
OQU83714	Sorghum	cytosol, nucleus, plastid	22.23	20.17
TraesCS2D01G077900.1	Wheat	cytosol	8.87	15.74

Protein Annotations

EMBL:ACUP02004720	EnsemblPlants:KRH50936	EnsemblPlantsGene:GLYMA_07G252300	EntrezGene:100795200	Gene3D:1.10.287.110	InterPro:DUF3444
InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR45089	PFAM:PF00226
PFAM:PF11926	PFscan:PS50076	PRINTS:PR00625	ProteinID:KRH50936	ProteinID:KRH50936.1	SEG:seg
SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0002338D9B	UniProt:I1KN40	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr7:+:42987420..42991730

Molecular Weight (calculated)

108903.0 Da

IEP (calculated)

6.761

GRAVY (calculated)

-0.783

Length

958 amino acids

Sequence
(BLAST)

001: MDCNKEEALR AKDIAEKKME NRDFVGARKI ALKAQQLYPD LENIAQMLVV CDVHCSSEQK LFGNEMDWYE ILQVEQTAGD AIIKKQYRKF ALQLHPDKNN
101: FAGAESAFKL IGEAQRVLLD REKRSLFDMK RRVPTNKPAM SRFNSTVKNN VRPNSSCSNS QQQQQSRQPA QQQQNGDRPT FWTVCPFCSV RYQYYKEILN
201: KSLRCQNCKR PFVAYEVNVQ GTSSPATNST QQASDQQKDG LNHGAFKMGA GSQGNSQAEK SNMGPYDKKR PSNVSGKPNG KRKRKQVAES SEGSDTMSSN
301: DSEEDIVAGK DGNSSVENHS SPREGHPRRS TRQKHQVSYK ENVKNNDNGF LKPRGDGESH GKTTKMNDQK GLAAEHKEGK QKQHLYSERN EETKTDRGKD
401: AVGGSTQMDG NSEHSPDSTS KAENHPNVYV YPDAEFNDFF KGKNKECFAA GQIWGIYDTA EGMPRFYALI RKVLSPGFKL QIIWFESHPD CKDEINWVNE
501: ELPVACGKYK LGDTDITEDH LMFSHLVLCE KISRNTFKVY PRKGETWALF KNWDIKWYMD VKSHQLYEYE FVEILTDYVE GKGVYVAYMA KLKGFVSLFL
601: RNINEENKSF QIPPQELFRF SHRVPSFKLT GQEGVGVPAG SYELDPGALP VNLEEIAVPE NSDVKVGRSS SGGENTRPSN RSEPLMTSEG DASIPKVNLE
701: RSNLATENKD SVDDSDNCCA PPESSPEAIN VPDTQFFDFD GGRALEKFQI GQIWAFYSDE DGLPKYYGQI KKIETSPDLE LHVYWLTCCW LPENTIKWED
801: KDILISCGRF KVNETHDFLS VYSTTSCVSH QVHADAVGKN KNYAIFPRKG DVWALYRKWT NKMKCFEMEN CEYDIVEVVE ETDLFINVLV LEFVSGYTSV
901: FRGKSNEGSS VNLRIPRKEL LRFSHQIPAF KLTEEHGNLK GFWELDPGAL PMHYYGLK

Best Arabidopsis Sequence Match ( AT5G18750.1 )
(BLAST)

001: MSNKDEALRA KDLAEDWMSK SDFTTARRIA IKAQKMDATL ESVVARMIMV CDVHCAALEK SGDETDWYKI LQVEQTADEN TIKKQYKKLA LHLHPDKNKL
101: PGAESAFKTI GEAQRVLLDK DKRRFHDMRR KPVFRRPAPA PAPAPSFQPP QQAPTTPFFT QRGFQTNVNV ARKRPENQKK PQAQPTGFDG LASFTTSCAF
201: CHRKYEYQRK LINTLMTCLN CGKQYVAFQE TFQPPVQPTF SFFQQSKVPT QEAGKAVEKQ PESCAKSFFS KEGSRAKSSG VSAENINGKR KRKKVVESSD
301: SSCSESSIDC NEVPAGGQDS GSSGAQHSRR SVRSKQQVSY KEDKEEDAES AEESDFRKKS HEDQPFTETL PNGLNRTKKS KAAKNSSSGS ASDAEIQCTD
401: PDFSNFEKSR EVTCFKAGQT WAIYDDMGGM PRYYAIIRKV IRKPSFMLKI QWLEAEPDDE KANLWVRKNL PISIGKFKLG GNENIEKTPC FSHMIYFKVG
501: SMKDTVRVYP RIGETWALFK NWDINWSSGR RRSSHEHEYE YEFVEILSEY VEGVAIQVAF LRKIKGFTSV FCRIAPGGGS DTIQIPPHEL LRFSHSIPST
601: KLTGKEGNGV PIGSYEFDTA ALPQKIEQEE AVPVLRESAK LNQVNHNSPP SSEPDCIVIP NFQFNNFSAE RLEGKFAPGQ IWSLNSKEDG LPKCYAKIQQ
701: IVWRPVFKLQ INRLEPKSLL ENVIQWHDKR MPVSCGNFTL KEGRDETLTK VTDFSHQIKA EKHFRINEYI VVPKTGEIWA MYKNWSETIK ATSLKRCEYE
801: VVEVLDDNDS HIEVMLLEQV DGFISVFKEK LEGGIDVKKK IPRCELLRFS HYVPAFRLTG ERDGALRGYV ELDPSAFPLN LRRS

Arabidopsis Description

DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q3E9D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.