Factsheet for VIT_17s0000g01140.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G001860.1	Barley	nucleus	47.62	27.27
Os04t0388800-01	Rice	nucleus	58.33	24.58
GSMUA_Achr8P00660_001	Banana	cytosol	55.95	23.42
AT5G50115.1	Thale cress	cytosol	42.86	22.27
Zm00001d050565_P001	Maize	cytosol	55.95	21.89
GSMUA_Achr11P...	Banana	cytosol	42.46	21.31
VIT_16s0050g02590.t01	Wine grape	cytosol	62.3	21.13
GSMUA_Achr3P02570_001	Banana	nucleus	42.86	20.65
EES10633	Sorghum	cytosol	59.92	20.54
TraesCS2D01G283100.2	Wheat	cytosol	59.52	20.46
TraesCS2A01G284200.2	Wheat	cytosol	59.52	20.46
VIT_01s0010g03760.t01	Wine grape	cytosol	66.27	20.44
Zm00001d003948_P001	Maize	cytosol	59.13	20.24
VIT_17s0000g01150.t01	Wine grape	nucleus	71.03	20.2
Os02t0510000-01	Rice	cytosol	57.94	19.89
Zm00001d025238_P001	Maize	cytosol	57.94	19.89
OQU85000	Sorghum	cytosol	57.14	19.78
GSMUA_Achr6P12230_001	Banana	nucleus	44.84	19.48
GSMUA_Achr2P21160_001	Banana	cytosol	40.87	19.14
TraesCS2B01G301100.1	Wheat	cytosol	53.57	19.12
Zm00001d025585_P001	Maize	cytosol	51.59	17.74
Os03t0401200-01	Rice	cytosol	52.38	17.65
Zm00001d025584_P001	Maize	cytosol	51.19	17.6
VIT_12s0057g00710.t01	Wine grape	cytosol	48.41	17.58
GSMUA_Achr10P...	Banana	cytosol	42.46	17.46
EES10933	Sorghum	cytosol	48.81	16.99
TraesCS3B01G607500.1	Wheat	cytosol	50.0	16.98
EES07899	Sorghum	cytosol	49.21	16.87
TraesCS3A01G536400.1	Wheat	cytosol	49.6	16.85
TraesCS3D01G541800.1	Wheat	cytosol	49.6	16.76
TraesCS5A01G493100.1	Wheat	cytosol	48.41	16.03
Os01t0923800-01	Rice	nucleus	47.22	15.99
TraesCS4D01G315600.1	Wheat	cytosol	47.62	15.77
TraesCS3B01G470100.1	Wheat	nucleus	43.65	15.15
TraesCS3A01G435100.1	Wheat	nucleus	44.44	14.16
VIT_02s0012g02290.t01	Wine grape	nucleus	32.54	13.87
KXG34016	Sorghum	nucleus	43.25	13.15
Zm00001d011997_P001	Maize	nucleus	42.46	13.02
TraesCS4B01G319100.1	Wheat	cytosol	34.52	12.22
VIT_05s0020g02050.t01	Wine grape	nucleus	36.51	11.02
VIT_14s0068g01140.t01	Wine grape	cytosol	30.95	10.37
VIT_05s0077g01780.t01	Wine grape	nucleus	7.14	8.26
VIT_14s0030g00640.t01	Wine grape	nucleus	34.92	7.53
VIT_01s0010g03770.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_17s0000g01140	EMBL:FN594950	EnsemblPlants:VIT_17s0000g01140.t01	EnsemblPlantsGene:VIT_17s0000g01140	InterPro:DUF3444	PANTHER:PTHR44137
PANTHER:PTHR44137:SF4	PFAM:PF11926	ProteinID:CCB43336	ProteinID:CCB43336.1	SEG:seg	UniParc:UPI0002109CD1
UniProt:F6GSW7	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr17:-:812997..813755

Molecular Weight (calculated)

29016.3 Da

IEP (calculated)

5.397

GRAVY (calculated)

-0.420

Length

252 amino acids

Sequence
(BLAST)

001: MTMSVTEPDI HDFDKHRTEK CFRENQVWAA YDNGDGMPRC YAIVHSVESL EPFRIRISWL NTKSRSTEMT SVNWVCSGFM KTSGDFQVGR LVDYDSLISF
101: SHRVKWTKVG GGAIRIYPRK GEVWAVYRNW SPDWNELTPD EVIQKYDVVE VIMEDYEWDH RHGGVAVIPL VKVSGFKAVF HRHLDPNAVR MIPREELFRF
201: SHQVPSVVLT GREAENAPKG CRELDPAATP LELLEVITVS EEEESVRTAE LD

Best Arabidopsis Sequence Match ( AT5G53150.3 )
(BLAST)

001: MECNKDEAKR AMDIAERKMT EKDYTGAKKF ANKAQNLFPE LDGLKQLFVA INVYISGEKT FAGEADWYGV LGVDPFASDE ALKKQYRKLV LMLHPDKNKC
101: KGAEGAFNLV AEAWALLSDK DKRILYNVKR GKDVKAAQQR FPTTQREIPS HQPTSNGIPN VREHVVSSAR ARYKPATRKP AARMDRSRTG SPAFVYPTQE
201: SSTFWTMCNK CDTQYEYQRV YLNQTLLCPH CHHGFVAEEK TPPTNIPKPP VNISSNQHHR SSKNQASNKN SNGSSYRREP ATSVNHNFQW DSSRMGGSYS
301: RNATNETANV VQQGQDKLKR VFWETQEREA ARGFTNSDLG NFKRQKTDDS HMRGPSAGKL SNQIGASRSS TPFYAANENT ESSNTIGSRH PYVQALLRSD
401: IKKALMDRGQ SEIFKRLPMM IAKMEGKVNP TEGEKNSTKA MSSKASEVER SKMSSTANEV ERSVEVIPHE SDEVKEIVVP DSDFHNFDLD RSESAFKDDQ
501: IWAAYDDADG MPRFYARIQK VISVNPFKLK ISWLNSKTTS EFGPIDWMGA GFAKSCGDFR CGRYESTDTL NAFSHSVDFT KGARGLLHIL PKKGQVWALY
601: RNWSPEWDKN TPDEVKHKYE MVEVLDDYTE DDQSLTVALL LKAEGFRVVF RRCTEKLGVR KIAKEEMLRF SHQVPHYILT GKEADNAPEG FLELDPAATP
701: CAFSSENAEA DEKSEAVKEN EQGEAVKENE ESEALKENEE SEAVKENEEV GMDLD

Arabidopsis Description

DnaJ heat shock amino-terminal domain protein [Source:UniProtKB/TrEMBL;Acc:Q9FGM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.