Factsheet for VIT_01s0010g03760.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g03770.t01	Wine grape	cytosol	28.64	96.69
VIT_17s0000g01140.t01	Wine grape	cytosol	20.44	66.27
GSMUA_Achr8P00660_001	Banana	cytosol	43.7	59.3
KRH09248	Soybean	nucleus	55.94	58.66
KRH38748	Soybean	nucleus	56.55	56.9
VIT_16s0050g02590.t01	Wine grape	cytosol	51.65	56.8
GSMUA_Achr11P...	Banana	cytosol	31.09	50.6
GSMUA_Achr10P...	Banana	cytosol	37.94	50.57
PGSC0003DMT400059130	Potato	cytosol	47.98	50.39
GSMUA_Achr2P21160_001	Banana	cytosol	32.93	50.0
Solyc01g044270.2.1	Tomato	cytosol	47.0	49.36
GSMUA_Achr3P02570_001	Banana	nucleus	30.48	47.61
GSMUA_Achr6P12230_001	Banana	nucleus	33.41	47.07
VIT_17s0000g01150.t01	Wine grape	nucleus	51.04	47.07
Os03t0401200-01	Rice	cytosol	42.84	46.79
Zm00001d003948_P001	Maize	cytosol	42.11	46.74
EES10633	Sorghum	cytosol	41.98	46.67
TraesCS2D01G283100.2	Wheat	cytosol	41.74	46.52
EES07899	Sorghum	cytosol	41.74	46.39
TraesCS2A01G284200.2	Wheat	cytosol	41.62	46.38
TraesCS2B01G301100.1	Wheat	cytosol	39.9	46.18
Zm00001d025238_P001	Maize	cytosol	41.37	46.05
OQU85000	Sorghum	cytosol	41.0	46.02
TraesCS3D01G541800.1	Wheat	cytosol	41.98	45.98
Os02t0510000-01	Rice	cytosol	41.25	45.91
TraesCS3B01G607500.1	Wheat	cytosol	41.49	45.69
Zm00001d025584_P001	Maize	cytosol	40.88	45.57
TraesCS3A01G536400.1	Wheat	cytosol	41.37	45.55
Zm00001d025585_P001	Maize	cytosol	40.76	45.43
TraesCS5A01G493100.1	Wheat	cytosol	41.98	45.07
TraesCS4D01G315600.1	Wheat	cytosol	41.74	44.81
Os04t0388800-01	Rice	nucleus	32.19	43.98
Zm00001d050565_P001	Maize	cytosol	34.64	43.94
EES10933	Sorghum	cytosol	38.68	43.65
VIT_12s0057g00710.t01	Wine grape	cytosol	35.86	42.22
TraesCS4B01G319100.1	Wheat	cytosol	36.6	41.99
Os01t0923800-01	Rice	nucleus	35.13	38.58
TraesCS3B01G470100.1	Wheat	nucleus	33.66	37.88
TraesCS3A01G435100.1	Wheat	nucleus	34.27	35.4
KXG34016	Sorghum	nucleus	33.05	32.57
Zm00001d011997_P001	Maize	nucleus	31.95	31.75
VIT_02s0012g02290.t01	Wine grape	nucleus	21.91	30.29
VIT_05s0020g02050.t01	Wine grape	nucleus	23.75	23.23
VIT_05s0077g01780.t01	Wine grape	nucleus	5.39	20.18
VIT_14s0030g00640.t01	Wine grape	nucleus	26.07	18.22
VIT_14s0068g01140.t01	Wine grape	cytosol	15.91	17.29

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:104877364	MapMan:35.2	ProteinID:CCB51308	ProteinID:CCB51308.1	ncoils:Coil
InterPro:DUF3444	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	UniProt:F6HGB5	EMBL:FN595754	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PFAM:PF00226	PFAM:PF11926	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PANTHER:PTHR44137	PANTHER:PTHR44137:SF4	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI00015CCEEF
ArrayExpress:VIT_01s0010g03760	EnsemblPlantsGene:VIT_01s0010g03760	EnsemblPlants:VIT_01s0010g03760.t01	unigene:Vvi.23034	RefSeq:XP_010656024.1	RefSeq:XP_010656028.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:21117742..21120902

Molecular Weight (calculated)

90803.3 Da

IEP (calculated)

8.615

GRAVY (calculated)

-0.821

Length

817 amino acids

Sequence
(BLAST)

001: MECNKDEATR AKEIAEKKFI ARDIAGAKKL ALKAQNLFPG LDGLPQMLAT LDVHISAENK INGEADWYGI LGVNPQADDD TVRKQYRKLA LMLHPDKNKS
101: IGADGAFKLI SEAWSLLSDK TKRIAYDQKR NVKAGQQKVQ PPSGGPSSSA AANGFYSFTK SRTTNTKAHK NTTRMGPSSA PASAHKPKPN TFWTVCHRCK
201: MQYEYLRIYL NHNLLCPNCH EPFFAVETPP PPSNGSKSSN PQWTFPQQQQ SSNHQAASKS TLNQGKKNAT SSNVGAGGFN APDSFNHTNF QWGPFSGTSC
301: ASNAAQAASV VQKAYANVKR EREEAQAASK REEALRRKHH ASKKMSGGSS AGMSNSAKRR RGMDDVGASS YGKDITNRMG PGTGGAGATG LQGNLETRAV
401: NGINKPNGSR EVSHTEMQNI LVEKARKEIR NKLNEWNSAT VTKTAVKGVE NGNEKANEKE EKIEKPLANG NVQDQNRPGE SANTKTGVHA FKSFPDTCGG
501: NTDIETIEPM SINVPDPDFH DFDKDRTERC FGDNQVWAAY DDDDGMPRYY AMIHSVISVN PFKMRISWLN SKTNSELGPL NWVGSGFSKT CGDFRVGRYE
601: VNNSLNSFSH KVRWAKGMRG AIRIFPRKGD VWAIYRNWSP DWNELTADEV IHKYDMVEVL EDYDEELGVT VTPLVKVAGF KTVFHRHLDP REVRRIPREE
701: MFRFSHHVPS YLLTGQEAPS APKGCRELDP AATPLELLQV ITDVREEEIV ENDKIREENI VNKTTKANEK EIEENSEKAT EKEISGDSKD MQEVEILEVA
801: KEKQDKKVEH AEEKPIS

Best Arabidopsis Sequence Match ( AT2G25560.1 )
(BLAST)

001: MEFNKEEATR AREIAKRKFL ANDFAGARKF ALKAQFLYPE LDGIAQMVAT FDVHLSAQNI IYGDVDHYGV LGLNPEADDE IVRKRYRKLA VMLHPDRNKS
101: VGAEEAFKFL SQAWGVFSDK AKRADYDLKR NVGLYKGGGA SSSRPATNGF QKVTKASGNT TKVKSSKRGI KRASDASAAA TTSTSAQKTT ADGTFWTVCR
201: TCRTQYEYHS VYLNQNLLCP NCRKPFIAVE TDPPGSGSIR KTFHEHQFDS LRHTTDGRKK NVPGRDNNGV YGEYDSFEWG VFTGTKTSAH ATPTGSRKDE
301: VVRREYTKRT AGPSSTIPPK RRKVMENAVA GGNIASCLAP KSTGVKEVSE DELKNLLKKK AKSVISRNLP ELCTIVAETE TNGRGMETED LNGFNAGSSV
401: NKNAIESCCM NTDKELNSLG ALTLDVTAPD FCDFDKDRTE KSVKDNQIWA FYDSHEGLPR SYALIHNVIS VDPFKVRMSW LTPVTNGEPS STNWLGFGIP
501: KSCGGFRVRK TLIYRSPYSF SHKVNLVKGN HGEFLIYPRT GDVWALYRKW SPDWNYLTGV ETVEYDIVEV VEGYTEEYGV VVVPLVKVAG FKAVFHHHLD
601: SKETKRFLRD EISRFSHKIP SYLLTGQEAP GAPRGCRQLD PAATPSQLLQ AIDDYR

Arabidopsis Description

At2g25560/F13B15.22 [Source:UniProtKB/TrEMBL;Acc:Q9SLA7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.