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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • extracellular 1
  • endoplasmic reticulum 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, endoplasmic reticulum, extracellular, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:extracellular
MultiLoc:nucleus
Plant-mPloc:endoplasmic reticulum, nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g062920.2.1
Solyc02g085570.2.1
Solyc06g075310.2.1
Solyc11g072410.1.1
Solyc12g008750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G05230.1 Solyc02g062920.2.1 AT4G36690.1 21798944
AT2G05230.1 Solyc02g085570.2.1 AT4G36690.1 21798944
AT2G05230.1 Solyc12g008750.1.1 AT4G36690.1 21798944
AT2G05230.1 Solyc06g075310.2.1 AT5G60340.1 21798944
AT2G05230.1 Solyc11g072410.1.1 AT5G60340.1 21798944
AT2G05250.1 Solyc02g062920.2.1 AT4G36690.1 21798944
AT2G05250.1 Solyc02g085570.2.1 AT4G36690.1 21798944
AT2G05250.1 Solyc12g008750.1.1 AT4G36690.1 21798944
AT2G05250.1 Solyc06g075310.2.1 AT5G60340.1 21798944
AT2G05250.1 Solyc11g072410.1.1 AT5G60340.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400048481 Potato cytosol 94.25 94.25
Solyc07g047690.1.1 Tomato nucleus 69.35 68.91
VIT_12s0057g00710.t01 Wine grape cytosol 54.28 61.24
KRH14137 Soybean nucleus 52.36 57.99
KRH73997 Soybean nucleus 52.11 57.87
CDY47298 Canola cytosol 35.89 48.12
CDX74632 Canola cytosol 35.89 47.87
CDY15046 Canola nucleus 41.76 47.39
Bra035378.1-P Field mustard cytosol 41.25 46.95
Bra013179.1-P Field mustard nucleus 41.38 46.75
CDX93081 Canola nucleus 41.38 46.75
AT2G05250.1 Thale cress cytosol 42.02 46.6
AT2G05230.1 Thale cress cytosol 42.02 46.6
Solyc03g019630.1.1 Tomato nucleus 8.68 43.59
GSMUA_Achr8P00660_001 Banana cytosol 31.67 41.2
Solyc03g007280.2.1 Tomato cytosol 9.58 38.46
Os02t0510000-01 Rice cytosol 34.35 36.65
GSMUA_Achr2P21160_001 Banana cytosol 24.9 36.25
GSMUA_Achr10P... Banana cytosol 28.35 36.22
GSMUA_Achr3P02570_001 Banana nucleus 24.14 36.14
GSMUA_Achr11P... Banana cytosol 23.12 36.06
OQU85000 Sorghum cytosol 33.46 35.99
TraesCS3B01G607500.1 Wheat cytosol 33.97 35.85
TraesCS2D01G283100.2 Wheat cytosol 33.33 35.61
TraesCS2A01G284200.2 Wheat cytosol 33.33 35.61
TraesCS3A01G536400.1 Wheat cytosol 33.59 35.44
EES10633 Sorghum cytosol 33.21 35.37
TraesCS2B01G301100.1 Wheat cytosol 31.8 35.27
GSMUA_Achr6P12230_001 Banana nucleus 26.05 35.17
TraesCS3D01G541800.1 Wheat cytosol 33.33 34.99
Zm00001d003948_P001 Maize cytosol 32.69 34.78
HORVU1Hr1G001860.1 Barley nucleus 19.41 34.55
Zm00001d050565_P001 Maize cytosol 28.35 34.47
Zm00001d025238_P001 Maize cytosol 32.31 34.47
TraesCS5A01G493100.1 Wheat cytosol 32.95 33.9
Zm00001d025585_P001 Maize cytosol 31.55 33.7
TraesCS4D01G315600.1 Wheat cytosol 32.57 33.51
Zm00001d025584_P001 Maize cytosol 31.29 33.42
Os03t0401200-01 Rice cytosol 31.8 33.29
EES07899 Sorghum cytosol 31.16 33.2
EES10933 Sorghum cytosol 30.27 32.73
Solyc01g044270.2.1 Tomato cytosol 32.18 32.39
Os04t0388800-01 Rice nucleus 24.01 31.44
TraesCS4B01G319100.1 Wheat cytosol 28.22 31.04
Solyc01g057670.1.1 Tomato mitochondrion 5.49 30.71
TraesCS3B01G470100.1 Wheat nucleus 28.22 30.44
Os01t0923800-01 Rice nucleus 28.74 30.24
TraesCS3A01G435100.1 Wheat nucleus 29.25 28.95
KXG34016 Sorghum nucleus 28.61 27.02
Zm00001d011997_P001 Maize nucleus 28.22 26.89
Solyc03g019640.1.1 Tomato nucleus 31.29 26.37
Solyc10g007630.1.1 Tomato cytosol 15.45 24.9
Solyc08g029220.1.1 Tomato nucleus 22.48 22.31
Solyc01g098310.1.1 Tomato cytosol 12.13 20.83
Solyc01g065570.2.1 Tomato cytosol 6.26 20.59
Solyc01g067780.1.1 Tomato cytosol 23.5 20.38
Solyc01g057650.1.1 Tomato cytosol 4.21 19.3
Solyc07g039220.1.1 Tomato cytosol 8.17 18.13
Solyc01g098330.1.1 Tomato nucleus 9.2 17.56
Solyc01g098250.2.1 Tomato nucleus 22.09 17.42
Solyc08g005300.1.1 Tomato nucleus 20.18 17.32
Solyc01g057750.1.1 Tomato cytosol 13.03 16.45
Solyc01g098340.2.1 Tomato cytosol 11.62 11.38
Solyc01g067770.1.1 Tomato extracellular, vacuole 2.3 6.59
Protein Annotations
EnsemblPlants:Solyc05g040050.1.1EnsemblPlantsGene:Solyc05g040050.1Gene3D:1.10.287.110InterPro:DUF3444InterPro:DnaJ_domainInterPro:IPR001623
InterPro:IPR036869InterPro:J_dom_sfPANTHER:PTHR44137PANTHER:PTHR44137:SF2PFAM:PF00226PFAM:PF11926
PFscan:PS50076PRINTS:PR00625SEG:segSMART:SM00271SUPFAM:SSF46565UniParc:UPI00027660DD
UniProt:K4C085MapMan:35.2::::
Description
No Description!
Coordinates
chr5:+:49006661..49009012
Molecular Weight (calculated)
87954.4 Da
IEP (calculated)
8.244
GRAVY (calculated)
-0.700
Length
783 amino acids
Sequence
(BLAST)
001: MEKNVEEALQ AKANAERKFA ERDFVSAKNY ALRAQMLCPQ LDGISQMVAT FGVHSAAEIK VNGELDFYTI LGMDPSANRA KLKKQYKRMA VLLHPDKNKN
101: VGADGAFKFI SEAWTVLSDR AKRSAYDQRR NLFTLHTSGV GNYANYSNTP ASHGRLDTFW TVCTSCQVQY EYHRKYVNKR LSCKNCRGVF IAVETGLAPV
201: NGSYAFSPWP YVPENGYKSH GCGVTYVPTS PAYSANSRVT GHHSKHGSEH ASNLSFQWSS FPGTSAGVVD PNGSSTGFSF IQQTNSKASG KKANGKQELT
301: KTVADGSVRS DQLPRRPGRP PKKRKIDLES TNGYGNGDVA SNAAAEVIMA DGNGSESLKR NAKLPTPEVP IRRWPTAPAF DPRPLLIDKA RTDIRKKLEE
401: IRLDAVESEK KRKAHAQFGE SSERPKREGL GLTAHQSDMR KTGSMSLTVP DSDFHDFDKD RSEDCFMPKQ IWALYDEEDG MPRLYCLIRQ VISVQPFKVH
501: ISYLSSKTDS EFGIVNWLDS GFTKSCGKFR AFNSEVIEQV NIFSHLLGGE KAGRGGCVQI YPKRGDIWAI YRNWSPDWNR KTPDEVRHQY EMVEVLGDYS
601: EDFGVCIAPL VKLDGFKTIY RRNTNQDAIR KIPRREMLRF SHQVPSCLLK RETMNLPEGC WELDPAATPD DLLQGVHDVQ EERPIQTKRS SGVDLDEMSQ
701: AETRILAEQD LRQREYSAVP DMFDEATPGL EIQENSNEHQ TLFRPSTELP QSARQAHSFE EPSKMHNHSA TTPGEHPRAV MNE
Best Arabidopsis Sequence Match ( AT2G05250.1 )
(BLAST)
001: MEAYREEALR VKQIAERRFA EKDFTSARSY ALKAKSLFPD LEGLSQMVAT FEVYLASQTR SGGQIDYYAV LGLKPSAGKR EVKKQYKKMA VLLHPDKNKC
101: IGADGAFHLI SEAWSFLSNE FNKSTFYYKR KKHIDSTEVQ KHSTEYMPGT GTGTGTAVFD RFPPSSERLD TFWTVCTSCK VQYEYLRKYV NKRLSCKNCR
201: GAFIAVETGP APVSAPFHYT PPSHAPPSHA PPSHAPPSNG YGAHGYDAMS RMPTNSTYFL GHYPGQGHGY DYSTNGSYEW SSYSGTTTSP GNLDLKRVSS
301: VSNGYPYKHS NSVVSGGINK VKDGSNGTCS KKSTPGGLIY PNQISMSAHA SANKVGRPGK KSKVFMEAAA NGFVENPLRS VSVSKTANTD AKMDQDYKLH
401: IQSSTRRWSA ASVLDTRKPL IQKARTDIKQ RLEMMRLALE AAAAAEDATP LDEKTVLSCK LGDVTGRKTN GPITVPDSDF HDFDKNRSEE SFEPRQIWAI
501: YDEDDGMPRL YCVVREVLSV QPFKIDIAYL SSKTDIEFGS MKWVQYGFTK SCGHFRIRNS DIVDHVNIFS HLLKGKKTGR GGCVRIFPTA GEIWAVYKNW
601: SLNWDGSTPD EVRHQYEMVE ILDEYTEQYG VCVTPLVKLE GYKTVYHRST REDSKKWIPR CEMLRFSHQV PSWFLKDATS GFPENCWDLD PAAIPEELLH
701: IGAGTN
Arabidopsis Description
At2g05250/F5G3.15 [Source:UniProtKB/TrEMBL;Acc:Q9S7L6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.