Factsheet for Solyc12g008750.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g060030.2.1
Solyc02g077840.1.1
Solyc02g085420.2.1
Solyc03g006800.1.1
Solyc05g052960.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	Solyc02g077840.1.1	AT1G28360.1	21798944
AT4G36690.1	Solyc05g052960.2.1	AT2G39760.1	21798944
AT4G36690.1	Solyc02g085420.2.1	AT3G50670.1	21798944
AT4G36690.1	Solyc01g060030.2.1	AT5G49400.1	21798944
AT4G36690.1	Solyc03g006800.1.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000919	Potato	nucleus	93.74	94.05
CDY12868	Canola	mitochondrion	30.64	81.58
CDY67096	Canola	mitochondrion	31.14	76.52
Bra040973.1-P	Field mustard	nucleus	33.11	73.9
CDX75589	Canola	mitochondrion	42.83	73.24
GSMUA_Achr4P16510_001	Banana	nucleus	56.01	72.03
HORVU5Hr1G090000.2	Barley	nucleus	46.13	70.53
Solyc02g062920.2.1	Tomato	nucleus	64.42	69.82
CDY40492	Canola	nucleus	16.8	68.0
Solyc02g085570.2.1	Tomato	nucleus	62.11	67.56
AT1G60830.2	Thale cress	nucleus	12.19	66.67
VIT_04s0023g01450.t01	Wine grape	nucleus	61.78	66.37
CDY12869	Canola	nucleus	53.71	65.73
CDY40481	Canola	nucleus	55.68	65.5
Bra027119.1-P	Field mustard	nucleus	51.89	64.15
CDY55407	Canola	nucleus	11.7	63.39
GSMUA_Achr4P11020_001	Banana	nucleus	59.8	63.02
Bra031477.1-P	Field mustard	nucleus	61.61	62.96
CDY46188	Canola	nucleus	61.61	62.96
TraesCS4D01G143400.3	Wheat	nucleus	56.84	62.84
AT1G60900.1	Thale cress	nucleus	60.79	62.65
HORVU4Hr1G029030.3	Barley	nucleus	56.51	62.36
CDY03767	Canola	nucleus	62.11	62.11
CDY35472	Canola	nucleus	56.01	61.82
KRH56450	Soybean	nucleus	61.45	61.65
CDY24773	Canola	nucleus	56.18	61.55
Bra010569.1-P	Field mustard	nucleus	56.18	61.55
KRH64800	Soybean	nucleus	60.46	61.17
EES08974	Sorghum	nucleus	54.7	60.92
TraesCS4B01G145600.4	Wheat	nucleus	56.67	60.46
TraesCS4D01G150000.4	Wheat	nucleus	56.67	60.03
CDY40493	Canola	nucleus	27.68	59.79
AT4G36690.1	Thale cress	nucleus	56.01	59.34
TraesCS4A01G165000.4	Wheat	nucleus	56.84	58.97
Os11t0636900-02	Rice	nucleus	55.68	58.88
TraesCSU01G068100.3	Wheat	nucleus	56.01	58.62
TraesCS4A01G171800.3	Wheat	nucleus	55.85	58.35
Bra040940.1-P	Field mustard	nucleus	53.21	57.47
HORVU4Hr1G038850.14	Barley	nucleus	56.01	56.2
CDY66742	Canola	nucleus	52.22	55.91
CDY55589	Canola	mitochondrion	22.9	55.38
HORVU5Hr1G089980.2	Barley	nucleus, plastid	51.89	55.36
CDY30313	Canola	nucleus	53.54	55.27
KXG28995	Sorghum	nucleus	54.53	55.17
TraesCS5A01G366000.1	Wheat	nucleus	54.7	54.79
Bra031341.1-P	Field mustard	nucleus	22.41	54.18
Bra010656.1-P	Field mustard	mitochondrion, plastid	22.57	54.15
TraesCS5D01G375600.1	Wheat	nucleus	53.71	53.36
TraesCS5B01G368400.1	Wheat	nucleus	49.42	47.62
KXG29128	Sorghum	nucleus	44.81	42.97
TraesCS2A01G122400.1	Wheat	nucleus	10.87	40.49
TraesCS5A01G040700.1	Wheat	cytosol	10.87	39.76
TraesCS2B01G144600.1	Wheat	nucleus	10.54	39.26
TraesCS5B01G041900.1	Wheat	nucleus	10.54	38.55
TraesCS5D01G071700.1	Wheat	nucleus	9.06	31.98
TraesCS5B01G067400.1	Wheat	nucleus	9.23	29.95
TraesCS5D01G071600.1	Wheat	nucleus	8.9	28.88
Zm00001d007635_P004	Maize	nucleus	23.89	20.6
Solyc09g090420.2.1	Tomato	nucleus	16.47	9.05

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:GO:0000243	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008187	GO:GO:0009987
GO:GO:0016607	GO:GO:0030628	GO:GO:0071004	GO:GO:0089701	InterPro:IPR000504	InterPro:IPR012677
UniProt:K4DBW3	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc12g008750.1	EnsemblPlants:Solyc12g008750.1.1
TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI0002769580	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:2109108..2115828

Molecular Weight (calculated)

67320.2 Da

IEP (calculated)

8.211

GRAVY (calculated)

-0.967

Length

607 amino acids

Sequence
(BLAST)

001: MDSNENGLPQ ITPCDTGGDN EIAGVDNGEE EHGSSKRRSS SKHSSRDYEG ERESSRSRDR EGDKGRDKDR GRSRDRDRDQ EKDRDRRHSY RSERHKTRGR
101: DDDANVSDGG PESREYWQKD YDRERDERHK HRSKSYEKER EEGHRHRSKS YDKDREERDR HRSKSYDKDR EDRHGRRSHS RGTSSRRSRS RSRSRSRSRS
201: KSKRVSGFDM APPTSALLSG APALTASAGL LPGTAPAIPG MLPNMFPLAS GPLGAIPVLP VQAMTQQATR HARRVYVGGL PPTANEQSVA TYFNHVMSAI
301: GGNTAGPGDA VVNVYINHEK KFAFVEMRSV EEASNAMALD GIIFEGTQVK VRRPTDYNPS LAATLGPSQP NPNLNLAAVG LSPGSTGGLE GPDRIFVGGL
401: PYYFTEAQIR ELLESFGPLR GFNLVKDKET GNSKGYAFCV YADVSVTDIA CTALNGIKMG DKTLTVRRAS QGTLQPKPEQ EIVLMHAQQQ IALQRLMLQP
501: GGPPTKVLCL THVVSPDELK DDEDYEDIVE DMRMECGKFG NLVNLVIPRP RSDGEPTPGV GKVFLEYADV ESSSRAQQGL NGRKFGGNEV VAVFYSENKF
601: SEGDYEG

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.