Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84685 | Canola | nucleus | 11.86 | 35.22 |
| VIT_05s0049g01490.t01 | Wine grape | nucleus | 30.68 | 34.56 |
| GSMUA_Achr11P... | Banana | nucleus | 13.67 | 31.79 |
| KRH69095 | Soybean | nucleus | 8.33 | 30.87 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, golgi, plastid | 12.58 | 30.62 |
| KRH31685 | Soybean | nucleus | 26.79 | 30.05 |
| Zm00001d048364_P002 | Maize | nucleus | 23.89 | 27.05 |
| OQU93274 | Sorghum | nucleus | 23.71 | 27.04 |
| Os03t0138100-01 | Rice | nucleus | 13.67 | 23.48 |
| CDX79530 | Canola | nucleus | 25.07 | 23.01 |
| Bra022941.1-P | Field mustard | nucleus | 25.52 | 22.36 |
| Os01t0956600-01 | Rice | nucleus | 11.49 | 20.89 |
| AT2G33435.1 | Thale cress | nucleus | 24.89 | 20.75 |
| Solyc02g062920.2.1 | Tomato | nucleus | 8.96 | 17.68 |
| Solyc02g085570.2.1 | Tomato | nucleus | 8.6 | 17.03 |
| Solyc12g008750.1.1 | Tomato | nucleus | 9.05 | 16.47 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | ncoils:Coil | GO:GO:0000243 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0008187 | GO:GO:0016607 | GO:GO:0030628 | GO:GO:0071004 | GO:GO:0089701 |
| InterPro:IPR000504 | InterPro:IPR012677 | UniProt:K4CW68 | InterPro:Nucleotide-bd_a/b_plait_sf | PFscan:PS50102 | PANTHER:PTHR23139 |
| PANTHER:PTHR23139:SF56 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:Solyc09g090420.2 |
| EnsemblPlants:Solyc09g090420.2.1 | UniParc:UPI000276AD7A | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr9:-:69937822..69947691
Molecular Weight (calculated)
124465.0 Da
IEP (calculated)
6.686
GRAVY (calculated)
-1.135
Length
1105 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGSSRQKVKN GKHNSSKGDS SDGTSARTRP LSFDEIMLRR KSKAEERDIK NNFIGVDDVS HKEDRPKKTT DRLEPERHRY ESLPSVSRHN SENSRKLGPN
0101: PTEANMMADK YARDKHRESR ESEIKLKTSV NKDVSNKRLA GSNTDKDCPV IRRKDQDLID DSGNETGKRR SRDLTRKEKS ADKTDGRHRE GRKDKIPDKE
0201: ERQSYRKRKD MEMSNDSLLN EAEKRHSRNH GRIDSYADRT KEKSESRRRK HQNDDEERND ALLNEADRRH SRNHGRIDSY ADRTKEKSES GRRKHRSDEE
0301: ERNGALLNEA EKRHLRNHGR RDSYADRTKE KSESVRRKSD EEERNREKNA DKKHSSVKVS EITGRVEASR AHLEEERPKR RRSRSRENDR DRGRRSRSGS
0401: PRGRKHSDHD LRERGEFSSH SSKDKSGRSH YDLDKKISSN GSDSHSNRHE GSTSGLGGYS PRKRKSEAAA KTPPPTNRSP ERKAAWWDLP PASGGISVTG
0501: SVPSSVKSSM QPVIPNTHQF SSMIPASSYT TMAAGVSYSY LTSSVHAIDS VQLTQATRPM RRLYVENLPN SASEKEILDW INNFLMSSGV NRIQGTQPCI
0601: SCMIHKEKCQ ALLEFLTPED ASAALSFDGR SFSGSILKIR RPKDFVEVAT GVPQKSVAAA DRIDNTVEDS SYKIFVGGIS RTISSEMLME IAKAFGPLKA
0701: YHFRMNSDLN EPCAFLEKSC AGLNGMKLGG KVLTVVRAVP DTALLDKDEN TPLYRIPQHA KPLLEKHTEV LKLKNVVDAN VLSFLSEAEL EELLEDIRLE
0801: CARFGAIKSI NVVKQSQCSL ISDPAAMDTS STLNDSNMDF GEECDKNDPI TRSDDHELEV GGPHFPSSDH HELEVGGSHI PNSDDHELEV GRPHFPNSDE
0901: PMETNSDKEA ERCADSKTHI SESSQDDSQK AGDDDALAGG SHSDDRPSEE LIKDDSSDPL PDDSSVSAQE TIFQENLEVT RTGMVSERKD ENANPSPLEH
1001: LEINNDSPVK EAIKSEEDNG NVDDRPSEPE FSSKEELDAP EELEKKEEIP ITEVFDPGCV LVEFRRAEAA CTAAHCLHGR LFDDRIVTVE YVPLDLYQTK
1101: FAKQN
0101: PTEANMMADK YARDKHRESR ESEIKLKTSV NKDVSNKRLA GSNTDKDCPV IRRKDQDLID DSGNETGKRR SRDLTRKEKS ADKTDGRHRE GRKDKIPDKE
0201: ERQSYRKRKD MEMSNDSLLN EAEKRHSRNH GRIDSYADRT KEKSESRRRK HQNDDEERND ALLNEADRRH SRNHGRIDSY ADRTKEKSES GRRKHRSDEE
0301: ERNGALLNEA EKRHLRNHGR RDSYADRTKE KSESVRRKSD EEERNREKNA DKKHSSVKVS EITGRVEASR AHLEEERPKR RRSRSRENDR DRGRRSRSGS
0401: PRGRKHSDHD LRERGEFSSH SSKDKSGRSH YDLDKKISSN GSDSHSNRHE GSTSGLGGYS PRKRKSEAAA KTPPPTNRSP ERKAAWWDLP PASGGISVTG
0501: SVPSSVKSSM QPVIPNTHQF SSMIPASSYT TMAAGVSYSY LTSSVHAIDS VQLTQATRPM RRLYVENLPN SASEKEILDW INNFLMSSGV NRIQGTQPCI
0601: SCMIHKEKCQ ALLEFLTPED ASAALSFDGR SFSGSILKIR RPKDFVEVAT GVPQKSVAAA DRIDNTVEDS SYKIFVGGIS RTISSEMLME IAKAFGPLKA
0701: YHFRMNSDLN EPCAFLEKSC AGLNGMKLGG KVLTVVRAVP DTALLDKDEN TPLYRIPQHA KPLLEKHTEV LKLKNVVDAN VLSFLSEAEL EELLEDIRLE
0801: CARFGAIKSI NVVKQSQCSL ISDPAAMDTS STLNDSNMDF GEECDKNDPI TRSDDHELEV GGPHFPSSDH HELEVGGSHI PNSDDHELEV GRPHFPNSDE
0901: PMETNSDKEA ERCADSKTHI SESSQDDSQK AGDDDALAGG SHSDDRPSEE LIKDDSSDPL PDDSSVSAQE TIFQENLEVT RTGMVSERKD ENANPSPLEH
1001: LEINNDSPVK EAIKSEEDNG NVDDRPSEPE FSSKEELDAP EELEKKEEIP ITEVFDPGCV LVEFRRAEAA CTAAHCLHGR LFDDRIVTVE YVPLDLYQTK
1101: FAKQN
0001: MNEVNKQKEN RDGHETLVNE EGSAARTRPT SVEEIRLRRK RKESLENVKE ETVGAAQLLG YDLVEKASDY HESKNLRREE HVEDSSRKEK EAISRCREEK
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G33435]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.