Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84685 | Canola | nucleus | 13.86 | 36.56 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, golgi, plastid | 16.62 | 35.9 |
| KRH31685 | Soybean | nucleus | 34.56 | 34.42 |
| KRH69095 | Soybean | nucleus | 10.4 | 34.23 |
| GSMUA_Achr11P... | Banana | nucleus | 16.51 | 34.11 |
| Solyc09g090420.2.1 | Tomato | nucleus | 34.56 | 30.68 |
| OQU93274 | Sorghum | nucleus | 27.62 | 27.97 |
| VIT_13s0139g00410.t01 | Wine grape | cytosol | 1.94 | 27.94 |
| Zm00001d048364_P002 | Maize | nucleus | 27.73 | 27.87 |
| Os03t0138100-01 | Rice | nucleus | 16.31 | 24.88 |
| CDX79530 | Canola | nucleus | 30.28 | 24.67 |
| Os01t0956600-01 | Rice | nucleus | 15.19 | 24.51 |
| Bra022941.1-P | Field mustard | nucleus | 29.97 | 23.31 |
| AT2G33435.1 | Thale cress | nucleus | 29.46 | 21.81 |
| VIT_13s0139g00390.t01 | Wine grape | plasma membrane | 3.06 | 19.23 |
| VIT_04s0023g01450.t01 | Wine grape | nucleus | 10.7 | 18.58 |
| VIT_00s0561g00030.t01 | Wine grape | cytosol, nucleus, plasma membrane | 8.56 | 16.73 |
| VIT_00s0611g00010.t01 | Wine grape | nucleus | 5.1 | 0.78 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:AM478138 | ProteinID:CAN81690 | ProteinID:CAN81690.1 | ProteinID:CCB48605 |
| ProteinID:CCB48605.1 | UniProt:F6H8J3 | EMBL:FN595496 | GO:GO:0000243 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0008187 | GO:GO:0016607 | GO:GO:0030628 | GO:GO:0071004 | GO:GO:0089701 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23139 |
| PANTHER:PTHR23139:SF56 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002108A18 |
| ArrayExpress:VIT_05s0049g01490 | EnsemblPlantsGene:VIT_05s0049g01490 | EnsemblPlants:VIT_05s0049g01490.t01 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5:-:8809324..8847176
Molecular Weight (calculated)
109128.0 Da
IEP (calculated)
8.442
GRAVY (calculated)
-0.773
Length
981 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKRLYVYAF AVRLIAERSC GRVIVPVLFR DSLNFYQVVS LATDLMSRSN RPKEKYGKST ELYLDNFKEG TAARTRPFSF DEIMLRRKNK KLYGDVKDGA
101: GEEGNISRKD IVKNVSDCYE SDKGYKHNED SFPGAINHSS EDFVKVSSRK KDENTSMKEG NLGNVKDKES HNSEDKLKAK PNKGMTDKSK EGKINQRVHG
201: RKKIDERSRR SSDDSESEPE KKFSRDSVGK DRYADRSRKS EKESKRKHRT GEDEKNRERN SMKKHDPGKR HESEFLDRKE RRESPPSRYE ESRPKRRRSR
301: SRERDKDRDK RSSSLSPRAQ KRTSHHGREH AELSLHSLKD RSGRQHSDAD RNRISNNGSS SHFRRHGGSA SGLGGYSPRK RRTEAAIKTP SPTNRSPEKK
401: SAGWDLPPSR TDGMNAGSVL SSLQVLKPTV SSNADELPSA VPVAVPVTAT TAKPPLPRIY SDAVSKNKNV SIDSIQLTQA TRPMRRLYVE NLPVSSSEKA
501: LMECLNNFLL SSGINHVQGT PPCISCIIHK EKGQALVEFL TPEDASAALS FDGISFSGSI LKIRRPKDFV DMTGVQEKLV AAPDAISDIV KDSPHKIFIG
601: GISRALSSDM LMEIAAAFGP LKAYRFQVNE DLGEPCAFLE YVDQSVTLKA CAGLNGMKLG GQVLTVVQAI PNALAMENTG NLPFYGIPEH AKPLLERPTQ
701: VLKLKNVVNP DDLSSLSEAE LEEILEDIRL ECTRFGTVKS VNIVKYNNSH VSTLEVYEAA DNTGSNLGCD GNSMKAETLG GGTDNGSSDI SGIKPPTDVK
801: DLKEVDEVVE RNSISDDKSL TDLIKNELCE PSHIDSNTAV KEPGCPDGSD DIPRGLPDQL NNMKHEVELR NDKAADVIQE DFIIKNKLMT VEEETNRKLL
901: GTSAELDSSP GIKSDFTGKN DSEKGLCDLD DMFEVGCVLV EYGRTEASCM AAHCLHGRYF DDRVVVVGYV ALDLYRMKFP R
101: GEEGNISRKD IVKNVSDCYE SDKGYKHNED SFPGAINHSS EDFVKVSSRK KDENTSMKEG NLGNVKDKES HNSEDKLKAK PNKGMTDKSK EGKINQRVHG
201: RKKIDERSRR SSDDSESEPE KKFSRDSVGK DRYADRSRKS EKESKRKHRT GEDEKNRERN SMKKHDPGKR HESEFLDRKE RRESPPSRYE ESRPKRRRSR
301: SRERDKDRDK RSSSLSPRAQ KRTSHHGREH AELSLHSLKD RSGRQHSDAD RNRISNNGSS SHFRRHGGSA SGLGGYSPRK RRTEAAIKTP SPTNRSPEKK
401: SAGWDLPPSR TDGMNAGSVL SSLQVLKPTV SSNADELPSA VPVAVPVTAT TAKPPLPRIY SDAVSKNKNV SIDSIQLTQA TRPMRRLYVE NLPVSSSEKA
501: LMECLNNFLL SSGINHVQGT PPCISCIIHK EKGQALVEFL TPEDASAALS FDGISFSGSI LKIRRPKDFV DMTGVQEKLV AAPDAISDIV KDSPHKIFIG
601: GISRALSSDM LMEIAAAFGP LKAYRFQVNE DLGEPCAFLE YVDQSVTLKA CAGLNGMKLG GQVLTVVQAI PNALAMENTG NLPFYGIPEH AKPLLERPTQ
701: VLKLKNVVNP DDLSSLSEAE LEEILEDIRL ECTRFGTVKS VNIVKYNNSH VSTLEVYEAA DNTGSNLGCD GNSMKAETLG GGTDNGSSDI SGIKPPTDVK
801: DLKEVDEVVE RNSISDDKSL TDLIKNELCE PSHIDSNTAV KEPGCPDGSD DIPRGLPDQL NNMKHEVELR NDKAADVIQE DFIIKNKLMT VEEETNRKLL
901: GTSAELDSSP GIKSDFTGKN DSEKGLCDLD DMFEVGCVLV EYGRTEASCM AAHCLHGRYF DDRVVVVGYV ALDLYRMKFP R
0001: MNEVNKQKEN RDGHETLVNE EGSAARTRPT SVEEIRLRRK RKESLENVKE ETVGAAQLLG YDLVEKASDY HESKNLRREE HVEDSSRKEK EAISRCREEK
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G33435]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.