Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 2
- plastid 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84685 | Canola | nucleus | 27.09 | 33.06 |
| KRH69095 | Soybean | nucleus | 21.37 | 32.55 |
| Os01t0956600-01 | Rice | nucleus | 28.19 | 21.05 |
| VIT_05s0049g01490.t01 | Wine grape | nucleus | 35.9 | 16.62 |
| KRH31685 | Soybean | nucleus | 31.72 | 14.62 |
| Solyc09g090420.2.1 | Tomato | nucleus | 30.62 | 12.58 |
| GSMUA_Achr4P16510_001 | Banana | nucleus | 12.56 | 12.08 |
| CDX79530 | Canola | nucleus | 28.85 | 10.88 |
| Bra022941.1-P | Field mustard | nucleus | 29.3 | 10.55 |
| AT2G33435.1 | Thale cress | nucleus | 29.74 | 10.19 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 12.11 | 9.55 |
| GSMUA_Achr1P06860_001 | Banana | nucleus | 11.89 | 9.34 |
| GSMUA_Achr11P... | Banana | nucleus | 4.41 | 4.21 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr11G02610_001 | EnsemblPlants:GSMUA_Achr11P02610_001 | EnsemblPlants:GSMUA_Achr11T02610_001 |
| InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M0RNU1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR23139 | PANTHER:PTHR23139:SF56 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| TMHMM:TMhelix | UniParc:UPI000295F655 | SEG:seg | : | : | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G02610_001]
Coordinates
chr11:+:1800543..1805416
Molecular Weight (calculated)
50633.6 Da
IEP (calculated)
4.356
GRAVY (calculated)
-0.256
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKGWLTLV EQVLTSFRWL CGNLDSHQHF IFFSLLVWIE DAFWGVLWSM TLSKFFRLLI FMQTVAPEKP KEELKVVDDF VKDSSHKIFI GGISEAISSN
101: MLMEIVGAFG TLNAYHFEFN KELNGPCAFL EYVDHSITSK ACAGLNGMKL GGRVLTAVQT LPDAQENAEI VSCYGIPVHA KSLLGPSTKV LQLKNVFNKE
201: EFLLLSESEL EEVIEDIRLE CTRFGTVKAV NIIRYISNLG TATENFETYP SGYLVKAESS MECPSNDSKQ DVDMAPHKDA ERPGDIRNDV VEIKNNNNMP
301: LKEIEENIVF GEIDGSTTSK DAQQIGDDAA EVEQNADLSS ITAEKAELSS DVDPASTENT CLQTSSAKEA ELTKEDDEHL STYPTGIDKE ATSDKEDHQD
401: FDVSLFEPGS VFVEFLRTEA TCMAAHCLHG RTYGEQTVTA GFFPHDMYLA RFRR
101: MLMEIVGAFG TLNAYHFEFN KELNGPCAFL EYVDHSITSK ACAGLNGMKL GGRVLTAVQT LPDAQENAEI VSCYGIPVHA KSLLGPSTKV LQLKNVFNKE
201: EFLLLSESEL EEVIEDIRLE CTRFGTVKAV NIIRYISNLG TATENFETYP SGYLVKAESS MECPSNDSKQ DVDMAPHKDA ERPGDIRNDV VEIKNNNNMP
301: LKEIEENIVF GEIDGSTTSK DAQQIGDDAA EVEQNADLSS ITAEKAELSS DVDPASTENT CLQTSSAKEA ELTKEDDEHL STYPTGIDKE ATSDKEDHQD
401: FDVSLFEPGS VFVEFLRTEA TCMAAHCLHG RTYGEQTVTA GFFPHDMYLA RFRR
0001: MNEVNKQKEN RDGHETLVNE EGSAARTRPT SVEEIRLRRK RKESLENVKE ETVGAAQLLG YDLVEKASDY HESKNLRREE HVEDSSRKEK EAISRCREEK
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G33435]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.