Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P16510_001 | Banana | nucleus | 50.17 | 61.44 |
| PGSC0003DMT400057795 | Potato | mitochondrion | 28.55 | 58.51 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 56.92 | 57.12 |
| VIT_00s0561g00030.t01 | Wine grape | cytosol, nucleus, plasma membrane | 48.62 | 55.98 |
| GSMUA_Achr11P... | Banana | nucleus | 11.59 | 14.11 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, golgi, plastid | 9.34 | 11.89 |
| VIT_00s0611g00010.t01 | Wine grape | nucleus | 27.68 | 2.48 |
Protein Annotations
| MapMan:16.4.1.2.11.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr1G06860_001 | EnsemblPlants:GSMUA_Achr1P06860_001 |
| EnsemblPlants:GSMUA_Achr1T06860_001 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M0RXP4 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF98 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | TIGRFAMs:TIGR01642 | InterPro:U2AF_lg | UniParc:UPI0002963A9B |
| SEG:seg | : | : | : | : | : |
Description
U2 snRNP auxiliary factor large subunit [Source:GMGC_GENE;Acc:GSMUA_Achr1G06860_001]
Coordinates
chr1:+:5452687..5467511
Molecular Weight (calculated)
64234.6 Da
IEP (calculated)
9.527
GRAVY (calculated)
-0.730
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MSASDRRRES RSGGGGRDRI AFEERESHRE RNSHGSIREK LKMSERSRDR ENEGGRDKER DWDREKERDS SRLGRKERGQ DREKERNRDR RRDYERGRST
101: NDERGRDKFD EWDRFHNRDN DRRQKYDIEK EKRQKHRSRS RSKDRFSKRT KSRSPSPSKS KRTSGFDMAP LGVSDTAIAG SLPVVPQLVT GTLPTMLPVA
201: THQIGSIALM PAQAVTQQAT RHARRVYVGG LPPMANEQTI ATFFSHVMSA IGGNAAGPGD AVVNVYINHE KKFAFVEMRS VEEASNAMAL DGIIFEGVPV
301: KVRRPTDYNP SLAATLGPSQ PSPHLNLAAV GLLPSAIGGS EGPDRVFVGG LPYYFTDAQI RELLESFGPL RGFDLVKDRD TGNSKGYGFC VYQDPSVTDI
401: ACAALNGLKM GEKTLTVRRA TASMGQMKPE QELILQQAHE HIAIQKLALQ SGGASHFPGF ALNANTSAEP PTKVVCLTEV VSVDELRDEE VYKEILEDMR
501: EESEKFGSLI NLVIPRPGPT GEVISGVGKV FLEFANVTDS ARAKVSLHGR RFGGNVVSAT YYSEEKFATG DYDAMVVA
101: NDERGRDKFD EWDRFHNRDN DRRQKYDIEK EKRQKHRSRS RSKDRFSKRT KSRSPSPSKS KRTSGFDMAP LGVSDTAIAG SLPVVPQLVT GTLPTMLPVA
201: THQIGSIALM PAQAVTQQAT RHARRVYVGG LPPMANEQTI ATFFSHVMSA IGGNAAGPGD AVVNVYINHE KKFAFVEMRS VEEASNAMAL DGIIFEGVPV
301: KVRRPTDYNP SLAATLGPSQ PSPHLNLAAV GLLPSAIGGS EGPDRVFVGG LPYYFTDAQI RELLESFGPL RGFDLVKDRD TGNSKGYGFC VYQDPSVTDI
401: ACAALNGLKM GEKTLTVRRA TASMGQMKPE QELILQQAHE HIAIQKLALQ SGGASHFPGF ALNANTSAEP PTKVVCLTEV VSVDELRDEE VYKEILEDMR
501: EESEKFGSLI NLVIPRPGPT GEVISGVGKV FLEFANVTDS ARAKVSLHGR RFGGNVVSAT YYSEEKFATG DYDAMVVA
001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED
Arabidopsis Description
U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.