Factsheet for GSMUA_Achr4P11020_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr3P12320_001
GSMUA_Achr3P24290_001
GSMUA_Achr4P27220_001
GSMUA_Achr5P03320_001
GSMUA_Achr7P00820_001
GSMUA_Achr7P08090_001
GSMUA_Achr7P10650_001
GSMUA_Achr8P00050_001
GSMUA_Achr8P15820_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	GSMUA_Achr8P15820_001	AT1G28360.1	21798944
AT4G36690.1	GSMUA_Achr10P...	AT2G39760.1	21798944
AT4G36690.1	GSMUA_Achr7P10650_001	AT2G39760.1	21798944
AT4G36690.1	GSMUA_Achr10P...	AT3G50670.1	21798944
AT4G36690.1	GSMUA_Achr7P00820_001	AT3G50670.1	21798944
AT4G36690.1	GSMUA_Achr7P08090_001	AT3G50670.1	21798944
AT4G36690.1	GSMUA_Achr11P...	AT5G49400.1	21798944
AT4G36690.1	GSMUA_Achr3P24290_001	AT5G49400.1	21798944
AT4G36690.1	GSMUA_Achr11P...	AT5G51910.1	21798944
AT4G36690.1	GSMUA_Achr11P...	AT5G51910.1	21798944
AT4G36690.1	GSMUA_Achr3P12320_001	AT5G51910.1	21798944
AT4G36690.1	GSMUA_Achr4P27220_001	AT5G51910.1	21798944
AT4G36690.1	GSMUA_Achr5P03320_001	AT5G51910.1	21798944
AT4G36690.1	GSMUA_Achr8P00050_001	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040069	Potato	cytosol	45.31	83.92
CDY67096	Canola	mitochondrion	35.07	81.78
CDY12868	Canola	mitochondrion	32.29	81.58
GSMUA_Achr4P16510_001	Banana	nucleus	66.84	81.57
Bra040973.1-P	Field mustard	nucleus	35.76	75.74
CDX75589	Canola	mitochondrion	46.35	75.21
VIT_04s0023g01450.t01	Wine grape	nucleus	71.7	73.1
HORVU5Hr1G090000.2	Barley	nucleus	50.0	72.54
AT1G60830.2	Thale cress	nucleus	13.89	72.07
EES08974	Sorghum	nucleus	66.15	69.91
Solyc02g085570.2.1	Tomato	nucleus	67.53	69.71
PGSC0003DMT400033041	Potato	nucleus	67.01	69.42
Zm00001d048655_P012	Maize	extracellular, nucleus	64.93	69.39
Solyc02g062920.2.1	Tomato	nucleus	67.36	69.29
TraesCS4D01G143400.3	Wheat	nucleus	64.93	68.12
CDY40492	Canola	nucleus	17.71	68.0
HORVU4Hr1G029030.3	Barley	nucleus	64.93	68.0
CDY55407	Canola	nucleus	13.19	67.86
TraesCS4D01G150000.4	Wheat	nucleus	66.67	67.02
TraesCS4B01G145600.4	Wheat	nucleus	66.15	66.96
TraesCS4A01G165000.4	Wheat	nucleus	67.36	66.32
CDY40481	Canola	nucleus	59.2	66.09
Bra027119.1-P	Field mustard	nucleus	56.08	65.78
CDY24773	Canola	nucleus	63.19	65.7
Bra010569.1-P	Field mustard	nucleus	63.19	65.7
CDY12869	Canola	nucleus	56.42	65.52
CDY35472	Canola	nucleus	62.33	65.27
KXG28995	Sorghum	nucleus	67.36	64.67
AT1G60900.1	Thale cress	nucleus	65.97	64.52
KRH64800	Soybean	nucleus	66.67	64.0
KRH56450	Soybean	nucleus	67.19	63.97
TraesCS4A01G171800.3	Wheat	nucleus	64.24	63.68
TraesCSU01G068100.3	Wheat	nucleus	64.06	63.62
Os11t0636900-02	Rice	nucleus	63.37	63.59
Bra031477.1-P	Field mustard	nucleus	64.24	62.29
CDY46188	Canola	nucleus	64.24	62.29
Zm00001d048777_P007	Maize	nucleus	64.58	62.21
AT4G36690.1	Thale cress	nucleus	61.81	62.13
VIT_13s0139g00410.t01	Wine grape	cytosol	7.29	61.76
CDY03767	Canola	nucleus	64.24	60.96
PGSC0003DMT400000919	Potato	nucleus	63.19	60.17
HORVU4Hr1G038850.14	Barley	nucleus	63.02	60.0
Solyc12g008750.1.1	Tomato	nucleus	63.02	59.8
Bra040940.1-P	Field mustard	nucleus	58.16	59.61
CDY66742	Canola	nucleus	58.51	59.44
Zm00001d007632_P003	Maize	nucleus	64.41	58.98
CDY30313	Canola	nucleus	59.72	58.5
CDY40493	Canola	nucleus	28.3	58.01
GSMUA_Achr1P06860_001	Banana	nucleus	57.12	56.92
HORVU5Hr1G089980.2	Barley	nucleus, plastid	56.08	56.77
TraesCS5A01G366000.1	Wheat	nucleus	59.2	56.27
TraesCS5D01G375600.1	Wheat	nucleus	58.33	54.99
Bra031341.1-P	Field mustard	nucleus	23.44	53.78
CDY55589	Canola	mitochondrion	23.44	53.78
Bra010656.1-P	Field mustard	mitochondrion, plastid	22.74	51.78
TraesCS5B01G368400.1	Wheat	nucleus	54.34	49.68
KXG29128	Sorghum	nucleus	49.13	44.71
TraesCS2A01G122400.1	Wheat	nucleus	11.98	42.33
TraesCS2B01G144600.1	Wheat	nucleus	11.81	41.72
TraesCS5B01G041900.1	Wheat	nucleus	11.81	40.96
TraesCS5A01G040700.1	Wheat	cytosol	11.81	40.96
VIT_13s0139g00390.t01	Wine grape	plasma membrane	9.9	36.54
TraesCS5D01G071700.1	Wheat	nucleus	9.9	33.14
TraesCS5D01G071600.1	Wheat	nucleus	9.9	30.48
TraesCS5B01G067400.1	Wheat	nucleus	9.9	30.48
GSMUA_Achr11P...	Banana	nucleus	12.33	14.95
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, golgi, plastid	9.55	12.11

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G11020_001	EnsemblPlants:GSMUA_Achr4P11020_001
EnsemblPlants:GSMUA_Achr4T11020_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0SMW7	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI0002966DFA	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G11020_001]

Coordinates

chr4:-:7930881..7941256

Molecular Weight (calculated)

63683.0 Da

IEP (calculated)

8.401

GRAVY (calculated)

-0.910

Length

576 amino acids

Sequence
(BLAST)

001: MADYGGRYED NGDGYNEYGG GGGGGGASPL PRSSGFDVLG DPRSQYDSHE HERGSSKNRD RGRDRNRERD RNREREKDKE RGKDRERERD KDHGRHHRDH
101: KDRSERREHG RDRPEDHDQH RSRDRDSHRD RDRDGRHRHR SRSRSKGRSD HRSRSRSRSR SNSDNKFEFD FYTNSKRISG FDMAPPAAAL LPVANSAGQL
201: PVTTPAIPGM FPNMFPMATG QFQTIPMMPV QAMTQQATRH ARRVYVGGLP PTANEQSVAT FFSQVMSVIG GNTAGPGDAV VNVYINHEKK FAFVEMRSVE
301: EASNAMALDG IIFEGAPVKV RRPSDYNPSL AAALGPSQPN PNLNLSAVGL TPGSAGGLEG PDRIFVGGLP YYFTEAQVRE LLESFGPLRG FDLVKDRETG
401: NSKGYAFCVY QDLSVTDIAC AALNGIKMGD KTLTVRRANQ GATQPRPEQE SVLLQAQQQV ALQKLVYQVG SLSTKVVCLT QVVSADELKD DEEYEDIMED
501: MRGEGGKYGN LVNVVIPRPG PNGEPAPGVG KVFLEYADVD GSNKARQALN GRKFGGNQVV ATFYPESKFA QGEYDG

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.