Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 82.28 | 78.87 |
| VIT_05s0077g01180.t01 | Wine grape | nucleus | 72.44 | 70.5 |
| KRH50753 | Soybean | nucleus | 68.11 | 66.8 |
| KRH02335 | Soybean | nucleus | 67.72 | 66.41 |
| Solyc01g060030.2.1 | Tomato | nucleus | 68.11 | 65.28 |
| Os11t0199600-02 | Rice | nucleus | 67.72 | 63.0 |
| Zm00001d006930_P001 | Maize | nucleus | 65.75 | 62.55 |
| KXG36793 | Sorghum | nucleus | 66.14 | 62.45 |
| AT5G49400.1 | Thale cress | nucleus | 66.54 | 61.45 |
| CDX85408 | Canola | nucleus | 66.93 | 60.28 |
| Bra020636.1-P | Field mustard | nucleus | 64.96 | 59.78 |
| Bra010037.1-P | Field mustard | nucleus | 64.57 | 58.57 |
| CDX86235 | Canola | nucleus | 64.57 | 58.57 |
| TraesCS7A01G422700.1 | Wheat | nucleus | 61.42 | 58.43 |
| TraesCS7D01G415100.1 | Wheat | nucleus | 60.63 | 57.89 |
| TraesCS7B01G323100.1 | Wheat | nucleus | 60.63 | 57.68 |
| HORVU7Hr1G097780.1 | Barley | nucleus | 59.45 | 56.77 |
| TraesCS5A01G022300.1 | Wheat | nucleus | 57.09 | 55.56 |
| Zm00001d022296_P001 | Maize | nucleus | 47.64 | 54.5 |
| Os07t0640401-00 | Rice | nucleus | 11.02 | 43.08 |
| CDY05631 | Canola | nucleus | 64.57 | 37.79 |
| CDY33903 | Canola | nucleus | 62.6 | 36.89 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P24290_001 | EnsemblPlants:GSMUA_Achr3T24290_001 | EnsemblPlantsGene:GSMUA_Achr3G24290_001 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:Znf_CCHC_sf | PANTHER:PTHR13491 | PFAM:PF13917 | SEG:seg | SUPFAM:SSF57756 |
| UniParc:UPI000296C096 | UniProt:M0SHE5 | MapMan:35.2 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G24290_001]
Coordinates
chr3:+:24864739..24865807
Molecular Weight (calculated)
28895.3 Da
IEP (calculated)
10.485
GRAVY (calculated)
-1.521
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKKEEKAQ VAADRIKAAA LSAAKGLSRA QAERAAAAAA RNVNAYGQKE EGPSRWQERK EAKRQMYLMS TEKAVRLGER KDLKSCVSSS GGTSQCQKCY
101: QVGHWTYECK NERVYISRPS RTQQLKNPKL KMTPSVSYES DDPDIVKEVR DERHNKKDVG KKSSTKSKRK HRSGTDSEED SSEASSVFET ESESSYSYSS
201: SDSEERRRRK KKLKKRKHRR YSSSSDSSES ESASDSDSDE KSKRKKSRQH TRKR
101: QVGHWTYECK NERVYISRPS RTQQLKNPKL KMTPSVSYES DDPDIVKEVR DERHNKKDVG KKSSTKSKRK HRSGTDSEED SSEASSVFET ESESSYSYSS
201: SDSEERRRRK KKLKKRKHRR YSSSSDSSES ESASDSDSDE KSKRKKSRQH TRKR
001: MSNSKDEKSQ DAADRIKAAT LTAAKGLSRT QAERAAAAAA RNVNAYGQKE EGPSRWQEKR ELKRQMYLMS TEKAVRLGER KDKTMSASAV GSSASAASQC
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
Arabidopsis Description
At5g49400 [Source:UniProtKB/TrEMBL;Acc:Q6NMK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.