Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra009939.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G49400.1 | Bra009939.1-P | AT5G27860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010037.1-P | Field mustard | nucleus | 70.29 | 69.29 |
| AT5G49400.1 | Thale cress | nucleus | 68.84 | 69.09 |
| VIT_05s0077g01180.t01 | Wine grape | nucleus | 64.86 | 68.58 |
| KRH50753 | Soybean | nucleus | 61.96 | 66.02 |
| KRH02335 | Soybean | nucleus | 61.59 | 65.64 |
| GSMUA_Achr3P24290_001 | Banana | nucleus | 59.78 | 64.96 |
| Solyc01g060030.2.1 | Tomato | nucleus | 60.87 | 63.4 |
| GSMUA_Achr11P... | Banana | nucleus | 58.7 | 61.13 |
| CDY33903 | Canola | nucleus | 93.84 | 60.09 |
| Os11t0199600-02 | Rice | nucleus | 55.07 | 55.68 |
| CDY05631 | Canola | nucleus | 85.87 | 54.61 |
| TraesCS7A01G422700.1 | Wheat | nucleus | 52.54 | 54.31 |
| TraesCS7D01G415100.1 | Wheat | nucleus | 52.17 | 54.14 |
| Zm00001d006930_P001 | Maize | nucleus | 51.45 | 53.18 |
| TraesCS7B01G323100.1 | Wheat | nucleus | 51.45 | 53.18 |
| HORVU7Hr1G097780.1 | Barley | nucleus | 51.09 | 53.01 |
| KXG36793 | Sorghum | nucleus | 50.36 | 51.67 |
| TraesCS5A01G022300.1 | Wheat | nucleus | 47.83 | 50.57 |
| Zm00001d022296_P001 | Maize | nucleus | 38.41 | 47.75 |
| Os07t0640401-00 | Rice | nucleus | 10.14 | 43.08 |
Protein Annotations
| EnsemblPlants:Bra020636.1 | EnsemblPlants:Bra020636.1-P | EnsemblPlantsGene:Bra020636 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:Znf_CCHC_sf | PFAM:PF13917 | SEG:seg | SUPFAM:SSF57756 | UniParc:UPI00025466F8 |
| UniProt:M4DVU2 | MapMan:35.2 | : | : | : | : |
Description
AT5G49400 (E=5e-056) | zinc knuckle (CCHC-type) family protein
Coordinates
chrA02:-:24040272..24041102
Molecular Weight (calculated)
30869.2 Da
IEP (calculated)
10.584
GRAVY (calculated)
-1.614
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDAKEEKSQ VAADRIKAAA LTAAKGLSRT QAERAATAAA RNVNAYGQKE EGPSRWQEKR EAKRQMYLMS TEKAVRLGER KDNKSVSASA VVGGGGSQCQ
101: KCFQTGHWTY ECKNERVYVS RPSRTQQLKN PKLRTKPSVD DLDGGGDDGK IEVANGKGEG ERRAKRKQRS KSDSGSDSEA SVFESSDGSE SSGESDSEYS
201: SSSESEEERR RRRSKRTSKK KKPKQRKERR RRRRYSSCSS SSEEESSDSE SGSDSESDDD RRSSRKKKSK RHSKRR
101: KCFQTGHWTY ECKNERVYVS RPSRTQQLKN PKLRTKPSVD DLDGGGDDGK IEVANGKGEG ERRAKRKQRS KSDSGSDSEA SVFESSDGSE SSGESDSEYS
201: SSSESEEERR RRRSKRTSKK KKPKQRKERR RRRRYSSCSS SSEEESSDSE SGSDSESDDD RRSSRKKKSK RHSKRR
001: MSNSKDEKSQ DAADRIKAAT LTAAKGLSRT QAERAAAAAA RNVNAYGQKE EGPSRWQEKR ELKRQMYLMS TEKAVRLGER KDKTMSASAV GSSASAASQC
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
Arabidopsis Description
At5g49400 [Source:UniProtKB/TrEMBL;Acc:Q6NMK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.