Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85408 | Canola | nucleus | 75.27 | 73.4 |
| Bra010037.1-P | Field mustard | nucleus | 73.45 | 72.14 |
| CDX86235 | Canola | nucleus | 72.73 | 71.43 |
| VIT_05s0077g01180.t01 | Wine grape | nucleus | 65.45 | 68.97 |
| Bra020636.1-P | Field mustard | nucleus | 69.09 | 68.84 |
| KRH50753 | Soybean | nucleus | 64.0 | 67.95 |
| KRH02335 | Soybean | nucleus | 63.27 | 67.18 |
| GSMUA_Achr3P24290_001 | Banana | nucleus | 61.45 | 66.54 |
| Solyc01g060030.2.1 | Tomato | nucleus | 63.27 | 65.66 |
| GSMUA_Achr11P... | Banana | nucleus | 59.27 | 61.51 |
| Os11t0199600-02 | Rice | nucleus | 57.09 | 57.51 |
| Zm00001d006930_P001 | Maize | nucleus | 54.91 | 56.55 |
| KXG36793 | Sorghum | nucleus | 54.55 | 55.76 |
| TraesCS7A01G422700.1 | Wheat | nucleus | 53.09 | 54.68 |
| TraesCS7D01G415100.1 | Wheat | nucleus | 52.73 | 54.51 |
| HORVU7Hr1G097780.1 | Barley | nucleus | 52.0 | 53.76 |
| TraesCS7B01G323100.1 | Wheat | nucleus | 52.0 | 53.56 |
| TraesCS5A01G022300.1 | Wheat | nucleus | 50.55 | 53.26 |
| Zm00001d022296_P001 | Maize | nucleus | 42.18 | 52.25 |
| CDY05631 | Canola | nucleus | 70.55 | 44.7 |
| CDY33903 | Canola | nucleus | 66.91 | 42.69 |
| Os07t0640401-00 | Rice | nucleus | 9.82 | 41.54 |
Protein Annotations
| MapMan:35.2 | EntrezGene:835000 | UniProt:A0A178URC4 | ProteinID:AED95806.1 | EMBL:AK228757 | ArrayExpress:AT5G49400 |
| EnsemblPlantsGene:AT5G49400 | RefSeq:AT5G49400 | TAIR:AT5G49400 | RefSeq:AT5G49400-TAIR-G | EnsemblPlants:AT5G49400.1 | TAIR:AT5G49400.1 |
| EMBL:BT010944 | EMBL:BT011657 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008270 | RefSeq:NP_199751.2 | ProteinID:OAO95887.1 | PFAM:PF13917 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR13491 | UniProt:Q6NMK2 | UniParc:UPI000019709F | SEG:seg | : |
Description
At5g49400 [Source:UniProtKB/TrEMBL;Acc:Q6NMK2]
Coordinates
chr5:+:20030652..20032283
Molecular Weight (calculated)
31087.3 Da
IEP (calculated)
10.441
GRAVY (calculated)
-1.693
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNSKDEKSQ DAADRIKAAT LTAAKGLSRT QAERAAAAAA RNVNAYGQKE EGPSRWQEKR ELKRQMYLMS TEKAVRLGER KDKTMSASAV GSSASAASQC
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.