Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G49400.1 | KRG96768 | AT5G27860.1 | 21798944 |
| AT5G49400.1 | KRH68485 | AT5G27860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH02335 | Soybean | nucleus | 96.53 | 96.53 |
| VIT_05s0077g01180.t01 | Wine grape | nucleus | 77.99 | 77.39 |
| GSMUA_Achr11P... | Banana | nucleus | 71.43 | 69.81 |
| GSMUA_Achr3P24290_001 | Banana | nucleus | 66.8 | 68.11 |
| Solyc01g060030.2.1 | Tomato | nucleus | 69.5 | 67.92 |
| AT5G49400.1 | Thale cress | nucleus | 67.95 | 64.0 |
| Bra010037.1-P | Field mustard | nucleus | 67.95 | 62.86 |
| CDX86235 | Canola | nucleus | 67.95 | 62.86 |
| CDX85408 | Canola | nucleus | 68.34 | 62.77 |
| Bra020636.1-P | Field mustard | nucleus | 66.02 | 61.96 |
| Os11t0199600-02 | Rice | nucleus | 64.09 | 60.81 |
| KXG36793 | Sorghum | nucleus | 62.55 | 60.22 |
| Zm00001d006930_P001 | Maize | nucleus | 61.0 | 59.18 |
| TraesCS7D01G415100.1 | Wheat | nucleus | 57.92 | 56.39 |
| TraesCS7A01G422700.1 | Wheat | nucleus | 57.53 | 55.81 |
| HORVU7Hr1G097780.1 | Barley | nucleus | 57.14 | 55.64 |
| TraesCS7B01G323100.1 | Wheat | nucleus | 57.14 | 55.43 |
| TraesCS5A01G022300.1 | Wheat | nucleus | 55.21 | 54.79 |
| Zm00001d022296_P001 | Maize | nucleus | 43.63 | 50.9 |
| Os07t0640401-00 | Rice | nucleus | 11.2 | 44.62 |
| CDY05631 | Canola | nucleus | 65.25 | 38.94 |
| CDY33903 | Canola | nucleus | 64.09 | 38.52 |
Protein Annotations
| EMBL:ACUP02004715 | EMBL:BT096046 | EnsemblPlants:KRH50753 | EnsemblPlantsGene:GLYMA_07G241300 | EntrezGene:100807084 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008270 | PFAM:PF13917 | ProteinID:KRH50752.1 | ProteinID:KRH50753 |
| ProteinID:KRH50753.1 | SEG:seg | UniParc:UPI0001B16C94 | UniProt:C6TEM3 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr7:-:42141828..42143681
Molecular Weight (calculated)
28994.2 Da
IEP (calculated)
10.533
GRAVY (calculated)
-1.460
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKKEEKSQ AAAERIKAAA LSAAKGLSRA QAERAAAAAA RNVNAYGQKE EGPSRWQEKR EAKRQMYLMS TEKAVKLGER KDLKPAMSAA GGVAQCQKCF
101: QSGHWTYECK NERVYISRPS RTQQLKNPKL RVNVSVTYDL DDNIPDAKVE KAKTSSKKTK RKHRKDSDSG SDSEDSVFET DSGSGSSSVT GSDYSSESSS
201: GYSSSSDSEE ERRRRRKKKQ KRGRRKRYSS SESSDSDSAS DSDSDDERSR RKKRHNRRH
101: QSGHWTYECK NERVYISRPS RTQQLKNPKL RVNVSVTYDL DDNIPDAKVE KAKTSSKKTK RKHRKDSDSG SDSEDSVFET DSGSGSSSVT GSDYSSESSS
201: GYSSSSDSEE ERRRRRKKKQ KRGRRKRYSS SESSDSDSAS DSDSDDERSR RKKRHNRRH
001: MSNSKDEKSQ DAADRIKAAT LTAAKGLSRT QAERAAAAAA RNVNAYGQKE EGPSRWQEKR ELKRQMYLMS TEKAVRLGER KDKTMSASAV GSSASAASQC
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
Arabidopsis Description
At5g49400 [Source:UniProtKB/TrEMBL;Acc:Q6NMK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.