Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH50753 | Soybean | nucleus | 77.39 | 77.99 |
| KRH02335 | Soybean | nucleus | 76.63 | 77.22 |
| GSMUA_Achr11P... | Banana | nucleus | 76.25 | 75.09 |
| Solyc01g060030.2.1 | Tomato | nucleus | 74.33 | 73.21 |
| GSMUA_Achr3P24290_001 | Banana | nucleus | 70.5 | 72.44 |
| VIT_07s0151g01090.t01 | Wine grape | cytosol | 19.54 | 68.0 |
| AT5G49400.1 | Thale cress | nucleus | 68.97 | 65.45 |
| Bra010037.1-P | Field mustard | nucleus | 69.73 | 65.0 |
| CDX86235 | Canola | nucleus | 69.73 | 65.0 |
| Bra020636.1-P | Field mustard | nucleus | 68.58 | 64.86 |
| CDX85408 | Canola | nucleus | 69.73 | 64.54 |
| CDY05631 | Canola | nucleus | 66.67 | 40.09 |
| CDY33903 | Canola | nucleus | 64.75 | 39.21 |
Protein Annotations
| EntrezGene:100258605 | wikigene:100258605 | MapMan:35.2 | ProteinID:CCB47982 | ProteinID:CCB47982.1 | UniProt:F6H735 |
| EMBL:FN595246 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008270 | EntrezGene:LOC100258605 |
| wikigene:LOC100258605 | PFAM:PF13917 | PANTHER:PTHR13491 | SUPFAM:SSF57756 | TIGR:TC65192 | UniParc:UPI00015CBC6B |
| ArrayExpress:VIT_05s0077g01180 | EnsemblPlantsGene:VIT_05s0077g01180 | EnsemblPlants:VIT_05s0077g01180.t01 | unigene:Vvi.11663 | RefSeq:XP_002276973 | RefSeq:XP_002276973.1 |
| InterPro:Znf_CCHC_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5:-:933783..936246
Molecular Weight (calculated)
29384.7 Da
IEP (calculated)
10.606
GRAVY (calculated)
-1.471
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKKEEKAQ AAAERIKAAA LTAAKGLSRA QAERAAAAAA RNVNAYGQKE EGPSRWQEKR EAKRQMYLMS TEKAVILGER KDLKTTMSTI GGTSSQCQKC
101: FQTGHWTYEC KNERVYISRP SRTQQLKNPK LRMKLSISYD LDNPDIKKNE AAEKVDKKSK RKHQSDSDSG SDSEASVFET DSESSSVTGS EDSSGSSSGY
201: SSSSDSEEER RRRKKKKQKK GRRRHRRYSS SSESSDSDSG SESDSDERSS RRRSRRHSRR R
101: FQTGHWTYEC KNERVYISRP SRTQQLKNPK LRMKLSISYD LDNPDIKKNE AAEKVDKKSK RKHQSDSDSG SDSEASVFET DSESSSVTGS EDSSGSSSGY
201: SSSSDSEEER RRRKKKKQKK GRRRHRRYSS SSESSDSDSG SESDSDERSS RRRSRRHSRR R
001: MSNSKDEKSQ DAADRIKAAT LTAAKGLSRT QAERAAAAAA RNVNAYGQKE EGPSRWQEKR ELKRQMYLMS TEKAVRLGER KDKTMSASAV GSSASAASQC
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
Arabidopsis Description
At5g49400 [Source:UniProtKB/TrEMBL;Acc:Q6NMK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.