Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra009939.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G49400.1 | Bra009939.1-P | AT5G27860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86235 | Canola | nucleus | 99.29 | 99.29 |
| AT5G49400.1 | Thale cress | nucleus | 72.14 | 73.45 |
| Bra020636.1-P | Field mustard | nucleus | 69.29 | 70.29 |
| VIT_05s0077g01180.t01 | Wine grape | nucleus | 65.0 | 69.73 |
| KRH50753 | Soybean | nucleus | 62.86 | 67.95 |
| KRH02335 | Soybean | nucleus | 62.5 | 67.57 |
| Solyc01g060030.2.1 | Tomato | nucleus | 62.5 | 66.04 |
| GSMUA_Achr3P24290_001 | Banana | nucleus | 58.57 | 64.57 |
| GSMUA_Achr11P... | Banana | nucleus | 60.0 | 63.4 |
| Zm00001d006930_P001 | Maize | nucleus | 54.64 | 57.3 |
| Os11t0199600-02 | Rice | nucleus | 55.36 | 56.78 |
| KXG36793 | Sorghum | nucleus | 54.29 | 56.51 |
| TraesCS7A01G422700.1 | Wheat | nucleus | 52.14 | 54.68 |
| TraesCS7D01G415100.1 | Wheat | nucleus | 51.43 | 54.14 |
| TraesCS7B01G323100.1 | Wheat | nucleus | 51.43 | 53.93 |
| HORVU7Hr1G097780.1 | Barley | nucleus | 51.07 | 53.76 |
| TraesCS5A01G022300.1 | Wheat | nucleus | 48.21 | 51.72 |
| Zm00001d022296_P001 | Maize | nucleus | 40.36 | 50.9 |
| Os07t0640401-00 | Rice | nucleus | 8.93 | 38.46 |
Protein Annotations
| EnsemblPlants:Bra010037.1 | EnsemblPlants:Bra010037.1-P | EnsemblPlantsGene:Bra010037 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:Znf_CCHC_sf | PFAM:PF13917 | SEG:seg | SUPFAM:SSF57756 | UniParc:UPI000253EECF |
| UniProt:M4D0N8 | MapMan:35.2 | : | : | : | : |
Description
AT5G49400 (E=2e-054) | zinc knuckle (CCHC-type) family protein
Coordinates
chrA06:-:18773387..18774229
Molecular Weight (calculated)
31499.8 Da
IEP (calculated)
10.425
GRAVY (calculated)
-1.671
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MSESKDEKAQ VAADRIKAAA LTASKGLSRT QAERAAAAAS RNVNAYGQKE EGPSRWQEKR EAKRQMYLMS TEKAVRLGER KDKSVSASVV GGSSLAASQC
101: QKCFQTGHWT YECKNERVYI SRPSRTQQLK NPKLRMKPSV DDLDGDDDEK LDAGNGKDEE GERRASKKSK RKQRSKSESG SDSEASVFET DSSDGSESSG
201: ESDSEDSSSS DSEEERRRRR RNKRKSKKKP KQRKERRRRK YSSSSSEESS DSESASDSES DEDRSSRKKK SKRHSSNKRR
101: QKCFQTGHWT YECKNERVYI SRPSRTQQLK NPKLRMKPSV DDLDGDDDEK LDAGNGKDEE GERRASKKSK RKQRSKSESG SDSEASVFET DSSDGSESSG
201: ESDSEDSSSS DSEEERRRRR RNKRKSKKKP KQRKERRRRK YSSSSSEESS DSESASDSES DEDRSSRKKK SKRHSSNKRR
001: MSNSKDEKSQ DAADRIKAAT LTAAKGLSRT QAERAAAAAA RNVNAYGQKE EGPSRWQEKR ELKRQMYLMS TEKAVRLGER KDKTMSASAV GSSASAASQC
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
Arabidopsis Description
At5g49400 [Source:UniProtKB/TrEMBL;Acc:Q6NMK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.