Factsheet for TraesCS5A01G366000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G128600.1
TraesCS1A01G176500.1
TraesCS1A01G314200.1
TraesCS1B01G146600.1
TraesCS1B01G203600.1
TraesCS1B01G326500.1
TraesCS1D01G124800.1
TraesCS1D01G162500.1
TraesCS1D01G314700.1
TraesCS2A01G255800.1
TraesCS2D01G266900.1
TraesCS3A01G328100.1
TraesCS3B01G357600.1
TraesCS3D01G321700.1
TraesCS4A01G355900.1
TraesCS5A01G022300.1
TraesCS5A01G309300.1
TraesCS5B01G310000.1
TraesCS5B01G516200.1
TraesCS5D01G316300.1
TraesCS5D01G516300.1
TraesCS7A01G422700.1
TraesCS7B01G323100.1
TraesCS7D01G415100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	TraesCS1A01G314200.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS1B01G326500.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS1D01G314700.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS3A01G328100.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS3B01G357600.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS3D01G321700.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS2A01G255800.1	AT2G39760.1	21798944
AT4G36690.1	TraesCS2D01G266900.1	AT2G39760.1	21798944
AT4G36690.1	TraesCS1A01G128600.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1A01G176500.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1B01G146600.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1B01G203600.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1D01G124800.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1D01G162500.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS5A01G022300.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS7A01G422700.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS7B01G323100.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS7D01G415100.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS4A01G355900.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5A01G309300.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5B01G310000.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5B01G516200.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5D01G316300.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5D01G516300.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G090000.2	Barley	nucleus	60.73	92.7
TraesCS5D01G375600.1	Wheat	nucleus	82.84	82.16
PGSC0003DMT400040069	Potato	cytosol	38.12	74.28
CDY12868	Canola	mitochondrion	27.89	74.12
CDY67096	Canola	mitochondrion	29.54	72.47
HORVU5Hr1G089980.2	Barley	nucleus, plastid	67.82	72.23
TraesCS5B01G368400.1	Wheat	nucleus	73.93	71.11
CDX75589	Canola	mitochondrion	39.77	67.89
AT1G60830.2	Thale cress	nucleus	12.38	67.57
Bra040973.1-P	Field mustard	nucleus	29.7	66.18
GSMUA_Achr4P16510_001	Banana	nucleus	50.99	65.47
CDY55407	Canola	nucleus	12.05	65.18
TraesCS4A01G165000.4	Wheat	nucleus	61.22	63.42
KXG28995	Sorghum	nucleus	60.89	61.5
Zm00001d048777_P007	Maize	nucleus	60.23	61.04
Bra027119.1-P	Field mustard	nucleus	48.84	60.29
CDY40481	Canola	nucleus	50.83	59.69
GSMUA_Achr4P11020_001	Banana	nucleus	56.27	59.2
CDY12869	Canola	nucleus	48.18	58.87
CDY40492	Canola	nucleus	14.52	58.67
TraesCS4A01G171800.3	Wheat	nucleus	55.94	58.35
VIT_04s0023g01450.t01	Wine grape	nucleus	54.13	58.05
Zm00001d007632_P003	Maize	nucleus	59.41	57.23
PGSC0003DMT400033041	Potato	nucleus	52.15	56.83
Solyc02g085570.2.1	Tomato	nucleus	51.98	56.45
AT4G36690.1	Thale cress	nucleus	53.3	56.37
AT1G60900.1	Thale cress	nucleus	54.79	56.37
VIT_13s0139g00410.t01	Wine grape	cytosol	6.27	55.88
Bra010569.1-P	Field mustard	nucleus	50.99	55.78
CDY24773	Canola	nucleus	50.99	55.78
Solyc02g062920.2.1	Tomato	nucleus	51.49	55.71
CDY35472	Canola	nucleus	50.49	55.64
KRH56450	Soybean	nucleus	55.12	55.21
Bra031477.1-P	Field mustard	nucleus	53.63	54.71
CDY46188	Canola	nucleus	53.63	54.71
Solyc12g008750.1.1	Tomato	nucleus	54.79	54.7
KRH64800	Soybean	nucleus	54.13	54.67
CDY03767	Canola	nucleus	54.13	54.04
PGSC0003DMT400000919	Potato	nucleus	53.47	53.55
CDY40493	Canola	nucleus	24.42	52.67
Bra040940.1-P	Field mustard	nucleus	48.84	52.67
CDY66742	Canola	nucleus	48.84	52.2
CDY30313	Canola	nucleus	49.01	50.51
CDY55589	Canola	mitochondrion	20.13	48.61
Bra010656.1-P	Field mustard	mitochondrion, plastid	19.8	47.43
Bra031341.1-P	Field mustard	nucleus	19.64	47.41
TraesCS2A01G122400.1	Wheat	nucleus	12.05	44.79
TraesCS5A01G040700.1	Wheat	cytosol	11.22	40.96
VIT_13s0139g00390.t01	Wine grape	plasma membrane	7.76	30.13

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642	EnsemblPlantsGene:TraesCS5A01G366000	EnsemblPlants:TraesCS5A01G366000.1
InterPro:U2AF_lg	TIGR:cd12230	TIGR:cd12231	TIGR:cd12232	SEG:seg	:

Description

No Description!

Coordinates

chr5A:-:565742009..565746365

Molecular Weight (calculated)

68981.2 Da

IEP (calculated)

8.135

GRAVY (calculated)

-1.120

Length

606 amino acids

Sequence
(BLAST)

001: MAEHDAPPES GAARSPPAKK RGGDARSPQQ DAQPLSSRDR VRERDEDKDR ERHRRHGEDR ERYRDRESVR ERGEGSRDRE RHRREHREES RDRERHHREH
101: REGSRDRERH HREHREGSRD RERHHREHRE GSRDRERHHR DHREGSRDRE RHHRDHRERS ERREHRDRSD DRDYRRSCDR DAERRDRDRD GHRRHRSRSR
201: SRSESQSKRM SGFDQAPSEA IPILAPTATP VQLPELPAAN PGMFPNMLPN LVNVPALGQP LAMTQQATRH ARRVYVGGLP PIANEQTVAV FFNQVMAAIG
301: GNTFALGHAV VNVYINHDKK FAFVEMRSVE EASNAMALDG IMFEGAPVKV RRPTDYNPSQ AAALGPSQPN PNLNLAAVGL TPGAGGGLEG PDRIFVGGLP
401: YYFTEAQVRE LLETFGPLRG FDIVKDKETG NSKGYAFCLY KDVTVTDIAC AALNGIQLGD RTLTVRRANQ GAEPRPEQEN ILLQAQQEAQ MKRLVYEVGG
501: ALATKVVCLT QVVSADDLRD DEEYNDILED MTLEGHKYGN LVQAVIPRPH PSGDPVAGVG KVFLEYADVE SSAKARIGMH GRKFDGKETV AVFYPENKFA
601: EGDYDS

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.