Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG28995 | Sorghum | nucleus | 76.47 | 80.17 |
| Zm00001d048777_P007 | Maize | nucleus | 75.36 | 79.26 |
| HORVU5Hr1G090000.2 | Barley | nucleus | 47.54 | 75.31 |
| Os11t0636900-02 | Rice | nucleus | 67.41 | 73.87 |
| Zm00001d048655_P012 | Maize | extracellular, nucleus | 63.27 | 73.84 |
| TraesCS4B01G145600.4 | Wheat | nucleus | 65.82 | 72.76 |
| TraesCS4D01G150000.4 | Wheat | nucleus | 65.66 | 72.08 |
| GSMUA_Achr4P16510_001 | Banana | nucleus | 53.58 | 71.4 |
| TraesCS4A01G165000.4 | Wheat | nucleus | 65.5 | 70.43 |
| HORVU4Hr1G038850.14 | Barley | nucleus | 64.55 | 67.11 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 58.98 | 64.41 |
| HORVU5Hr1G089980.2 | Barley | nucleus, plastid | 54.05 | 59.75 |
| TraesCS5A01G366000.1 | Wheat | nucleus | 57.23 | 59.41 |
| TraesCS5D01G375600.1 | Wheat | nucleus | 55.48 | 57.12 |
| TraesCS5B01G368400.1 | Wheat | nucleus | 53.42 | 53.33 |
| TraesCS2A01G122400.1 | Wheat | nucleus | 11.61 | 44.79 |
| TraesCS2B01G144600.1 | Wheat | nucleus | 11.45 | 44.17 |
| TraesCS5B01G041900.1 | Wheat | nucleus | 11.61 | 43.98 |
| TraesCS5A01G040700.1 | Wheat | cytosol | 11.13 | 42.17 |
| TraesCS5D01G071700.1 | Wheat | nucleus | 9.54 | 34.88 |
| TraesCS5D01G071600.1 | Wheat | nucleus | 9.7 | 32.62 |
| TraesCS5B01G067400.1 | Wheat | nucleus | 9.38 | 31.55 |
| Zm00001d007635_P004 | Maize | nucleus | 29.09 | 25.99 |
| Zm00001d048364_P002 | Maize | nucleus | 17.01 | 10.96 |
Protein Annotations
| EntrezGene:100272843 | MapMan:16.4.1.2.11.2 | Gene3D:3.30.70.330 | UniProt:A0A1D6F7N0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM27250.1 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23139 |
| PANTHER:PTHR23139:SF80 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | TIGRFAMs:TIGR01642 |
| InterPro:U2AF_lg | UniParc:UPI0008455FA3 | EnsemblPlantsGene:Zm00001d007632 | EnsemblPlants:Zm00001d007632_P003 | EnsemblPlants:Zm00001d007632_T003 | SEG:seg |
Description
Splicing factor U2af large subunit A
Coordinates
chr2:-:236537623..236544099
Molecular Weight (calculated)
70216.2 Da
IEP (calculated)
8.911
GRAVY (calculated)
-0.833
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEYGERYQG NGDPATPEGG YAQTEYAAAG GSPPADRKPS VFSDHADGRS SQPQHETQSH GSGSSKSRER DRERDKGKDR ERGRDRVREK ERDRDRDKDR
101: ERGDRDRDRD RHHMDRRERS EIREHRDRSD DRDRHRDDRD RRRSHDSERR RDRDRDGHRR HRSRSPSMSR DRDRRSRSRS RSRSKSKRVS GFDQAPTQQA
201: LPIVAAGVIP GKFNHHFHKF FLLMIAGQLP GVTAPIPGVG VLPNLYNLAA GQPQAMTQQA TRHARRVYVG GLPPTANEQT VAIFFNGVMA AIGGNTAGPG
301: DAVLNVYINH DKKFAFVEMR SVEEASNAMV LDGIMFEGAP VKIRRPTDYN PSLAAALGPS QPNPNLNLSA VGLTPGSAGG LEGPDRIFVG GLQYYFTEAQ
401: VRELLESFGP LRGFDLVKDR ETGNSKGYAF CVYQDLNVTD IACAALNGIK MGDKTLTVRR ANQGASQPRP EQESILLQAQ QQVQMQKFVY QVGGALPTKV
501: VCLTQVVTED ELRDDEEYDD IVEDMREEGH KYEDTILLTL INHFIISASC LYISTLLTKI WTGNLVKVAI PRPDPSGAPV AGVGKVFLEY ADVEGSTKAK
601: TGMHGRKFGG NQVVAVFYPE DKFAAEQYD
101: ERGDRDRDRD RHHMDRRERS EIREHRDRSD DRDRHRDDRD RRRSHDSERR RDRDRDGHRR HRSRSPSMSR DRDRRSRSRS RSRSKSKRVS GFDQAPTQQA
201: LPIVAAGVIP GKFNHHFHKF FLLMIAGQLP GVTAPIPGVG VLPNLYNLAA GQPQAMTQQA TRHARRVYVG GLPPTANEQT VAIFFNGVMA AIGGNTAGPG
301: DAVLNVYINH DKKFAFVEMR SVEEASNAMV LDGIMFEGAP VKIRRPTDYN PSLAAALGPS QPNPNLNLSA VGLTPGSAGG LEGPDRIFVG GLQYYFTEAQ
401: VRELLESFGP LRGFDLVKDR ETGNSKGYAF CVYQDLNVTD IACAALNGIK MGDKTLTVRR ANQGASQPRP EQESILLQAQ QQVQMQKFVY QVGGALPTKV
501: VCLTQVVTED ELRDDEEYDD IVEDMREEGH KYEDTILLTL INHFIISASC LYISTLLTKI WTGNLVKVAI PRPDPSGAPV AGVGKVFLEY ADVEGSTKAK
601: TGMHGRKFGG NQVVAVFYPE DKFAAEQYD
001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED
Arabidopsis Description
U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.