Factsheet for HORVU4Hr1G038850.14

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G030660.5
HORVU1Hr1G046870.5
HORVU1Hr1G067160.1
HORVU2Hr1G064920.1
HORVU5Hr1G080210.1
HORVU5Hr1G117990.1
HORVU7Hr1G097780.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	HORVU1Hr1G067160.1	AT1G28360.1	21798944
AT4G36690.1	HORVU2Hr1G064920.1	AT2G39760.1	21798944
AT4G36690.1	HORVU1Hr1G030660.5	AT3G50670.1	21798944
AT4G36690.1	HORVU1Hr1G046870.5	AT3G50670.1	21798944
AT4G36690.1	HORVU7Hr1G097780.1	AT5G49400.1	21798944
AT4G36690.1	HORVU5Hr1G080210.1	AT5G51910.1	21798944
AT4G36690.1	HORVU5Hr1G117990.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G145600.4	Wheat	nucleus	80.83	85.94
TraesCS4D01G150000.4	Wheat	nucleus	79.5	83.94
TraesCS4A01G165000.4	Wheat	nucleus	80.17	82.91
CDY12868	Canola	mitochondrion	29.59	78.51
PGSC0003DMT400040069	Potato	cytosol	40.33	78.46
CDY67096	Canola	mitochondrion	31.57	77.33
HORVU5Hr1G090000.2	Barley	nucleus	50.58	77.08
CDX75589	Canola	mitochondrion	42.15	71.83
Bra040973.1-P	Field mustard	nucleus	32.07	71.32
GSMUA_Achr4P16510_001	Banana	nucleus	55.54	71.19
HORVU4Hr1G029030.3	Barley	nucleus	63.97	70.36
KXG28995	Sorghum	nucleus	68.43	69.0
Zm00001d048777_P007	Maize	nucleus	67.93	68.73
AT1G60830.2	Thale cress	nucleus	12.07	65.77
Zm00001d007632_P003	Maize	nucleus	67.11	64.55
CDY40492	Canola	nucleus	15.7	63.33
Solyc02g062920.2.1	Tomato	nucleus	58.51	63.21
VIT_04s0023g01450.t01	Wine grape	nucleus	59.01	63.19
GSMUA_Achr4P11020_001	Banana	nucleus	60.0	63.02
CDY55407	Canola	nucleus	11.57	62.5
Solyc02g085570.2.1	Tomato	nucleus	57.19	62.01
CDY12869	Canola	nucleus	50.74	61.9
HORVU5Hr1G089980.2	Barley	nucleus, plastid	57.69	61.34
PGSC0003DMT400033041	Potato	nucleus	56.36	61.33
CDY40481	Canola	nucleus	52.23	61.24
VIT_13s0139g00410.t01	Wine grape	cytosol	6.78	60.29
Bra027119.1-P	Field mustard	nucleus	48.93	60.29
CDY35472	Canola	nucleus	54.71	60.18
KRH64800	Soybean	nucleus	58.51	59.0
CDY24773	Canola	nucleus	53.88	58.84
Bra010569.1-P	Field mustard	nucleus	53.88	58.84
AT1G60900.1	Thale cress	nucleus	57.19	58.74
AT4G36690.1	Thale cress	nucleus	55.21	58.29
Bra040940.1-P	Field mustard	nucleus	54.05	58.19
CDY46188	Canola	nucleus	57.02	58.08
Bra031477.1-P	Field mustard	nucleus	57.02	58.08
KRH56450	Soybean	nucleus	57.52	57.52
CDY03767	Canola	nucleus	56.69	56.51
CDY66742	Canola	nucleus	52.73	56.26
Solyc12g008750.1.1	Tomato	nucleus	56.2	56.01
PGSC0003DMT400000919	Potato	nucleus	55.7	55.7
CDY30313	Canola	nucleus	53.88	55.44
CDY40493	Canola	nucleus	25.62	55.16
CDY55589	Canola	mitochondrion	21.98	52.99
Bra010656.1-P	Field mustard	mitochondrion, plastid	22.15	52.96
Bra031341.1-P	Field mustard	nucleus	21.49	51.79
VIT_13s0139g00390.t01	Wine grape	plasma membrane	8.76	33.97

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	UniProt:A0A287NU88	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:HORVU4Hr1G038850	EnsemblPlants:HORVU4Hr1G038850.14
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139
PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642
InterPro:U2AF_lg	UniParc:UPI000B467FB7	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:295653773..295662652

Molecular Weight (calculated)

67497.3 Da

IEP (calculated)

9.803

GRAVY (calculated)

-0.940

Length

605 amino acids

Sequence
(BLAST)

001: VPCSTCPDQV FPNPRTSQTL ERTDRAGHRH PTDSPQPLPL PLPLSRRMAE YVERYKGNGE PASVTGVSPP TKPTSFSDQP DGRSQQEVQP HEGRSSKSRE
101: RDRGREKDKD KERDREHGRD RERGRDKDRE RNRGDRDREH DRHHREHRER SEKREHRGHS DDHDRHRSRD HDVERRDRDR DGHRRHRSRS RSKGRERRSR
201: SRSRSRSKSK RVSGFDQGPS QAIPMVTPGT TPGQLPAVAP LITGMLPNMF NFTAPTQFNP LVMQPQAMTQ QATRHARRVY VGGLPPTANE QTVAIYFNQV
301: MAAIGGNTAG PGDAVLNVYI NHDKKFAFVE MRSVEEASNA MALDGIMFEG APVKVRRPTD YNPSLAAALG PSQPNPNLNL GAVGLTPGSA GGLEGPDRIF
401: VGGLPYYFTE AQVRELLESF GPLRGFDLVK DRETGNSKGY AFCVYQDLNV TDIACAALNG IKMGDKTLTV RRANQGTSQP RPEQETILLH AQQQVQMQKL
501: VLQVGGALPT KVVCLTQVIS ADELRDDEEY EDILEDMREE GRKYGNLVKA VIPRPDPSGA AAVPGVGKVF LEYADIDGST KAKVGMHGRK FGGNQVVAVF
601: YPENK

Best Arabidopsis Sequence Match ( AT4G36690.1 )
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA

Arabidopsis Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.