Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66742 | Canola | nucleus | 80.78 | 83.77 |
| CDY67096 | Canola | mitochondrion | 33.5 | 79.76 |
| PGSC0003DMT400040069 | Potato | cytosol | 41.33 | 78.14 |
| CDX75589 | Canola | mitochondrion | 46.09 | 76.34 |
| CDY12868 | Canola | mitochondrion | 28.91 | 74.56 |
| HORVU5Hr1G090000.2 | Barley | nucleus | 44.9 | 66.5 |
| Solyc02g062920.2.1 | Tomato | nucleus | 62.76 | 65.89 |
| CDY35472 | Canola | nucleus | 61.56 | 65.82 |
| Solyc02g085570.2.1 | Tomato | nucleus | 62.41 | 65.77 |
| CDY24773 | Canola | nucleus | 61.73 | 65.52 |
| GSMUA_Achr4P16510_001 | Banana | nucleus | 52.55 | 65.47 |
| PGSC0003DMT400033041 | Potato | nucleus | 61.22 | 64.75 |
| VIT_13s0139g00410.t01 | Wine grape | cytosol | 7.14 | 61.76 |
| CDY55407 | Canola | nucleus | 11.56 | 60.71 |
| CDY40492 | Canola | nucleus | 15.31 | 60.0 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 58.5 | 59.72 |
| TraesCS4B01G145600.4 | Wheat | nucleus | 57.65 | 59.58 |
| CDY12869 | Canola | nucleus | 50.0 | 59.27 |
| CDY40481 | Canola | nucleus | 51.87 | 59.11 |
| HORVU4Hr1G029030.3 | Barley | nucleus | 55.27 | 59.09 |
| TraesCS4D01G143400.3 | Wheat | nucleus | 54.93 | 58.83 |
| TraesCS4D01G150000.4 | Wheat | nucleus | 57.31 | 58.81 |
| EES08974 | Sorghum | nucleus | 54.25 | 58.53 |
| KRH64800 | Soybean | nucleus | 59.18 | 58.0 |
| TraesCS4A01G165000.4 | Wheat | nucleus | 56.97 | 57.27 |
| Os11t0636900-02 | Rice | nucleus | 55.78 | 57.14 |
| KRH56450 | Soybean | nucleus | 58.16 | 56.53 |
| TraesCS4A01G171800.3 | Wheat | nucleus | 54.93 | 55.59 |
| TraesCSU01G068100.3 | Wheat | nucleus | 54.59 | 55.34 |
| KXG28995 | Sorghum | nucleus | 55.95 | 54.83 |
| CDY46188 | Canola | nucleus | 54.93 | 54.38 |
| HORVU4Hr1G038850.14 | Barley | nucleus | 55.44 | 53.88 |
| CDY40493 | Canola | nucleus | 25.68 | 53.74 |
| CDY03767 | Canola | nucleus | 55.27 | 53.54 |
| Solyc12g008750.1.1 | Tomato | nucleus | 55.27 | 53.54 |
| PGSC0003DMT400000919 | Potato | nucleus | 54.76 | 53.22 |
| HORVU5Hr1G089980.2 | Barley | nucleus, plastid | 50.68 | 52.37 |
| CDY55589 | Canola | mitochondrion | 21.26 | 49.8 |
| TraesCS5A01G366000.1 | Wheat | nucleus | 50.51 | 49.01 |
| TraesCS5D01G375600.1 | Wheat | nucleus | 50.51 | 48.61 |
| TraesCS5B01G368400.1 | Wheat | nucleus | 48.64 | 45.4 |
| KXG29128 | Sorghum | nucleus | 43.03 | 39.97 |
| TraesCS2A01G122400.1 | Wheat | nucleus | 10.54 | 38.04 |
| TraesCS2B01G144600.1 | Wheat | nucleus | 10.2 | 36.81 |
| TraesCS5B01G041900.1 | Wheat | nucleus | 10.37 | 36.75 |
| TraesCS5A01G040700.1 | Wheat | cytosol | 10.2 | 36.14 |
| VIT_13s0139g00390.t01 | Wine grape | plasma membrane | 9.01 | 33.97 |
| TraesCS5D01G071700.1 | Wheat | nucleus | 9.52 | 32.56 |
| TraesCS5D01G071600.1 | Wheat | nucleus | 9.86 | 31.02 |
| TraesCS5B01G067400.1 | Wheat | nucleus | 9.69 | 30.48 |
| Zm00001d007635_P004 | Maize | nucleus | 24.49 | 20.45 |
| CDX84685 | Canola | nucleus | 6.97 | 11.02 |
| CDX79530 | Canola | nucleus | 18.2 | 8.89 |
| CDX84686 | Canola | nucleus | 9.01 | 5.91 |
Protein Annotations
| MapMan:16.4.1.2.11.2 | Gene3D:3.30.70.330 | GO:A0A078H0F4 | UniProt:A0A078H0F4 | EnsemblPlants:CDY30313 | ProteinID:CDY30313 |
| ProteinID:CDY30313.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00044985001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF80 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | TIGRFAMs:TIGR01642 | InterPro:U2AF_lg | UniParc:UPI0004EE6B1D |
| SEG:seg | : | : | : | : | : |
Description
BnaA09g09640DBnaA09g09640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0F4]
Coordinates
chrLK032252:+:165622..169401
Molecular Weight (calculated)
65020.8 Da
IEP (calculated)
6.542
GRAVY (calculated)
-0.839
Length
588 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDYEENGVA GDGFHSEDGG GRGGEIDDHR DSKSEKEMLD NEKDPGSKEE ESRVKGRDKE RDRDHERRRD RDGERIKRRD DRDEDRGRDR DRHHRSRHRD
101: RSVERGDRRE RARGDDDDYR RSRDRDFDRR RDYDKDRGDR RRRRSRSRGR SERRSRSPSK SNKEYFGLCV FDSLNINILN CSKRVSGFDM APPASGMLDA
201: GAAFTGQVPA PSPNLLPGNG MFPLQAGQPF GGVPMMPIQA MTQQATRHAR RVYVGGLSPS ANEQSVATFF SQAMAAIGGN SAGPGDAVVN VYINYEKKFA
301: FVEMRSVQEA SNAMTLDGII FEGAPVKVRR PSDYNPALAA TLGPSQPIPN LNLAAVGLTP GGAGALEGPD RLFVGGLPYY IPESQIRELL ESLGALKGFD
401: LVRDRETGNS KGYAFCAYQD PAVTDIACAA LNGITMGDKT LCVRRANQGA NQTKPEQESV LLHAQQQVAF QKIMLQQGTA AAAAATKVVC LTQVVTEDEL
501: RNDEEYEDIV VDMRDEGGKF GALTKVVIPR PSSNGEPVQG VGKVFLEYAE TESSSRARNG MNGRKFGGNE VVAVFYPEDK FEQADYSL
101: RSVERGDRRE RARGDDDDYR RSRDRDFDRR RDYDKDRGDR RRRRSRSRGR SERRSRSPSK SNKEYFGLCV FDSLNINILN CSKRVSGFDM APPASGMLDA
201: GAAFTGQVPA PSPNLLPGNG MFPLQAGQPF GGVPMMPIQA MTQQATRHAR RVYVGGLSPS ANEQSVATFF SQAMAAIGGN SAGPGDAVVN VYINYEKKFA
301: FVEMRSVQEA SNAMTLDGII FEGAPVKVRR PSDYNPALAA TLGPSQPIPN LNLAAVGLTP GGAGALEGPD RLFVGGLPYY IPESQIRELL ESLGALKGFD
401: LVRDRETGNS KGYAFCAYQD PAVTDIACAA LNGITMGDKT LCVRRANQGA NQTKPEQESV LLHAQQQVAF QKIMLQQGTA AAAAATKVVC LTQVVTEDEL
501: RNDEEYEDIV VDMRDEGGKF GALTKVVIPR PSSNGEPVQG VGKVFLEYAE TESSSRARNG MNGRKFGGNE VVAVFYPEDK FEQADYSL
001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA
Arabidopsis Description
U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.