Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84685 | Canola | nucleus | 26.99 | 87.37 |
| Bra022941.1-P | Field mustard | nucleus | 73.75 | 70.42 |
| AT2G33435.1 | Thale cress | nucleus | 50.0 | 45.43 |
| KRH69095 | Soybean | nucleus | 8.06 | 32.55 |
| VIT_05s0049g01490.t01 | Wine grape | nucleus | 24.67 | 30.28 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, golgi, plastid | 10.88 | 28.85 |
| GSMUA_Achr11P... | Banana | nucleus | 10.88 | 27.58 |
| KRH31685 | Soybean | nucleus | 22.51 | 27.51 |
| Zm00001d048364_P002 | Maize | nucleus | 20.85 | 25.72 |
| OQU93274 | Sorghum | nucleus | 20.68 | 25.7 |
| Solyc09g090420.2.1 | Tomato | nucleus | 23.01 | 25.07 |
| CDY55407 | Canola | nucleus | 2.16 | 23.21 |
| Os01t0956600-01 | Rice | nucleus | 11.63 | 23.03 |
| Os03t0138100-01 | Rice | nucleus | 11.96 | 22.39 |
| CDY67096 | Canola | mitochondrion | 4.57 | 22.27 |
| CDY12868 | Canola | mitochondrion | 3.99 | 21.05 |
| CDX84686 | Canola | nucleus | 15.53 | 20.85 |
| CDY40493 | Canola | nucleus | 4.65 | 19.93 |
| CDY66742 | Canola | nucleus | 8.97 | 19.05 |
| CDY35472 | Canola | nucleus | 8.55 | 18.73 |
| CDY12869 | Canola | nucleus | 7.56 | 18.35 |
| CDY40481 | Canola | nucleus | 7.81 | 18.22 |
| CDY30313 | Canola | nucleus | 8.89 | 18.2 |
| CDY03767 | Canola | nucleus | 9.14 | 18.12 |
| CDX75589 | Canola | mitochondrion | 5.32 | 18.03 |
| CDY46188 | Canola | nucleus | 8.8 | 17.85 |
| CDY24773 | Canola | nucleus | 8.06 | 17.51 |
| CDY40492 | Canola | nucleus | 2.08 | 16.67 |
| CDY55589 | Canola | mitochondrion | 2.91 | 13.94 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078CRW7 | EnsemblPlants:CDX79530 | ProteinID:CDX79530 | ProteinID:CDX79530.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00132281001 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF56 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE62FB | SEG:seg |
Description
BnaC03g18660D
Coordinates
chrLK031818:+:538349..546180
Molecular Weight (calculated)
134859.0 Da
IEP (calculated)
7.286
GRAVY (calculated)
-1.098
Length
1204 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNEVSDQKAK PDGDEKLVYE GSAARTRATS VEEIMLRRKR KDSLENLGAQ LLGNDLVEKA SDYHESGKGY DKSKEVSREE GVENSLRKKE DAISNSTEER
0101: QDKSRKEDSL GAVQLVGNNL VEKVSDYHES EKGNDRSEKP RHGELVNDSS RNKEEAISSS KDEKLDKEGT VGAATLLGND LGEKVSDDHA SEKGNDKSKK
0201: VRHEDRGKDS SRKKEDATSS SKNEGPDKPR KDDHVEAAQL LGNDLVEKVS DCRASDKELE KSKKVSCESV KDSSRKKEEA TSRSREERLD KPMTKDPVDK
0301: VSDYRASGRE HDRSKKLRPE ERIKDSSKKK EDTISSSREE KSMKDDPVGA AQLLSNDLVE KVSDYHESKR GYHRSEKLRR EEDDKDRLRK KVDANSSCRE
0401: EKLDKPTKEE EPAGHRKRKA EGEGSRTKEK IVEEHSKDRR IKKEETNSSF REERPDKKMK KEDLAANRKI RVEGEFPTTE TKTRAYRDGP SSRKRLRSLV
0501: VADIPRNENS TKPDSGNKRK NQNGNHMTNR ERDVSRRHDP TKVHAVEVSE RSEKREQPKS DRRDMRERRR SRSRDHGGQE RQKRSSPLPK AEKATSRHKR
0601: GHEDRSENTV KDRVGKHHFN DNDNKSRRYS SSKSELGGYS PRKRREDASV KAASPSNLPS EKKVAKWDLP PTVTAGMFSN SGFSGLQPAT QTAYPTMSEV
0701: SLTLLKPQIE ASFRTPPARQ TTSIDSVQLT ESTRRMRRLY AENVPDSASE KSLIECFNGY MLSSGSNHIK GSEPCISCII NKEKSQALVE FLTPQDASAA
0801: LSLDGCSFAG SNLKIRRPKD YVETTGVYVG YVMVTIHEAG FQTVAIFMQS GELEKKEPAT NALSDNVEDS SNKIFIGGFP KAISSEMLKE IVSVFGPLKA
0901: YRFVINNDLN QRCAFLEYID GSVTLKACAG LNGMKLGGSV ITAVCALPDS SSVASDENPP FYGIPEHAKP LLGKPKHILK LKNLVDPEDL PLLSVPEMKE
1001: ILEDVRLECA RFGVIKSINI VKHESKDISG SNTDASLNQE SKEMNVSVIQ EKDEISEKVD DTADNVDSGE VVRSDSSTGA DKFCEPCSVT ALETVSQANE
1101: DHDSTEQGNS EKLVGEIRAQ DEPENPQEVG SARAVKTRWD SGDKIEEEQD PEDVFEPGCI FIEYGRPEAT RVAAHSLHGR LYDSRIVKAE YVSKELYKIR
1201: FPSG
0101: QDKSRKEDSL GAVQLVGNNL VEKVSDYHES EKGNDRSEKP RHGELVNDSS RNKEEAISSS KDEKLDKEGT VGAATLLGND LGEKVSDDHA SEKGNDKSKK
0201: VRHEDRGKDS SRKKEDATSS SKNEGPDKPR KDDHVEAAQL LGNDLVEKVS DCRASDKELE KSKKVSCESV KDSSRKKEEA TSRSREERLD KPMTKDPVDK
0301: VSDYRASGRE HDRSKKLRPE ERIKDSSKKK EDTISSSREE KSMKDDPVGA AQLLSNDLVE KVSDYHESKR GYHRSEKLRR EEDDKDRLRK KVDANSSCRE
0401: EKLDKPTKEE EPAGHRKRKA EGEGSRTKEK IVEEHSKDRR IKKEETNSSF REERPDKKMK KEDLAANRKI RVEGEFPTTE TKTRAYRDGP SSRKRLRSLV
0501: VADIPRNENS TKPDSGNKRK NQNGNHMTNR ERDVSRRHDP TKVHAVEVSE RSEKREQPKS DRRDMRERRR SRSRDHGGQE RQKRSSPLPK AEKATSRHKR
0601: GHEDRSENTV KDRVGKHHFN DNDNKSRRYS SSKSELGGYS PRKRREDASV KAASPSNLPS EKKVAKWDLP PTVTAGMFSN SGFSGLQPAT QTAYPTMSEV
0701: SLTLLKPQIE ASFRTPPARQ TTSIDSVQLT ESTRRMRRLY AENVPDSASE KSLIECFNGY MLSSGSNHIK GSEPCISCII NKEKSQALVE FLTPQDASAA
0801: LSLDGCSFAG SNLKIRRPKD YVETTGVYVG YVMVTIHEAG FQTVAIFMQS GELEKKEPAT NALSDNVEDS SNKIFIGGFP KAISSEMLKE IVSVFGPLKA
0901: YRFVINNDLN QRCAFLEYID GSVTLKACAG LNGMKLGGSV ITAVCALPDS SSVASDENPP FYGIPEHAKP LLGKPKHILK LKNLVDPEDL PLLSVPEMKE
1001: ILEDVRLECA RFGVIKSINI VKHESKDISG SNTDASLNQE SKEMNVSVIQ EKDEISEKVD DTADNVDSGE VVRSDSSTGA DKFCEPCSVT ALETVSQANE
1101: DHDSTEQGNS EKLVGEIRAQ DEPENPQEVG SARAVKTRWD SGDKIEEEQD PEDVFEPGCI FIEYGRPEAT RVAAHSLHGR LYDSRIVKAE YVSKELYKIR
1201: FPSG
0001: MNEVNKQKEN RDGHETLVNE EGSAARTRPT SVEEIRLRRK RKESLENVKE ETVGAAQLLG YDLVEKASDY HESKNLRREE HVEDSSRKEK EAISRCREEK
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G33435]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.