Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU93274 | Sorghum | nucleus | 47.74 | 31.68 |
| GSMUA_Achr11P... | Banana | nucleus | 23.02 | 31.16 |
| Zm00001d048364_P002 | Maize | nucleus | 46.81 | 30.84 |
| VIT_05s0049g01490.t01 | Wine grape | nucleus | 24.88 | 16.31 |
| KRH31685 | Soybean | nucleus | 21.77 | 14.21 |
| Solyc09g090420.2.1 | Tomato | nucleus | 23.48 | 13.67 |
| Os11t0636900-02 | Rice | nucleus | 11.2 | 12.54 |
| CDX79530 | Canola | nucleus | 22.39 | 11.96 |
| Bra022941.1-P | Field mustard | nucleus | 22.39 | 11.42 |
| AT2G33435.1 | Thale cress | nucleus | 21.46 | 10.42 |
| Os01t0956600-01 | Rice | nucleus | 6.84 | 7.24 |
| CDX84685 | Canola | nucleus | 2.33 | 4.03 |
| KRH69095 | Soybean | nucleus | 1.24 | 2.68 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | UniProt:A0A0P0VST4 | ProteinID:BAS82202.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| EnsemblPlantsGene:Os03g0138100 | EnsemblPlants:Os03t0138100-01 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF56 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0003939D84 | SEG:seg |
Description
Similar to RNA recognition motif family protein, expressed. (Os03t0138100-01)
Coordinates
chr3:-:2103191..2112148
Molecular Weight (calculated)
73606.6 Da
IEP (calculated)
10.535
GRAVY (calculated)
-1.147
Length
643 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRVQNEKD SRRITSDGTA ARTRPLSIQD IMSRREKKTA SEAKKTKEGL EENSNGKSNH LESGRGSKSR KDVREMPLEG SKKDNSDKPG EGSKKDEMRH
101: TPREERRKDN MRDMQREVSK KDNLKDRPKD ISKIDNLKVK VKVPSKDDQR DAPKKSSKKE RSSTRDDSHL VDKDKGNHNS HKLSTYTSGR VGKSRGGNHG
201: EITARDGDAT IQESQKRPGK RWIDEPVGND RIKERSERRT DGKRNSRGFD DEKSSQVDRP TLKKQDAVRL QDPRHFDRKD GRKENAKLHH EEPRSKRRRS
301: TSRDHYQERH DRSVSPSSRE QRHSYRGHGH DYYPPYHSMD KSRRKHFETD RHRTSWNDGY SSGSYRRYES RLGGYSPRKR KTAPKDEQTT IKTASLVIRS
401: PEKKSATWDQ LPVATDLSNF VTTLQSTVGL KDSTVPVNFT TSKQDPNTTI GTILTGSNLA VDSVQLTQAT RPLRRLHIEN LPSLATEDML IGCLNEFLLS
501: SSASHIQRSK QPCLSCVINK DKRQAFVEFL TPEDATAALS FDGRSFGGSS LKIRRPKEYV EMAGILIGYV IIHVQDGEAK DFLSRIQGVM SILCDCCFFQ
601: NYWLLITLLA ESLWCSVHGK IRKTACTTWF NMLLLRSLLK RLN
101: TPREERRKDN MRDMQREVSK KDNLKDRPKD ISKIDNLKVK VKVPSKDDQR DAPKKSSKKE RSSTRDDSHL VDKDKGNHNS HKLSTYTSGR VGKSRGGNHG
201: EITARDGDAT IQESQKRPGK RWIDEPVGND RIKERSERRT DGKRNSRGFD DEKSSQVDRP TLKKQDAVRL QDPRHFDRKD GRKENAKLHH EEPRSKRRRS
301: TSRDHYQERH DRSVSPSSRE QRHSYRGHGH DYYPPYHSMD KSRRKHFETD RHRTSWNDGY SSGSYRRYES RLGGYSPRKR KTAPKDEQTT IKTASLVIRS
401: PEKKSATWDQ LPVATDLSNF VTTLQSTVGL KDSTVPVNFT TSKQDPNTTI GTILTGSNLA VDSVQLTQAT RPLRRLHIEN LPSLATEDML IGCLNEFLLS
501: SSASHIQRSK QPCLSCVINK DKRQAFVEFL TPEDATAALS FDGRSFGGSS LKIRRPKEYV EMAGILIGYV IIHVQDGEAK DFLSRIQGVM SILCDCCFFQ
601: NYWLLITLLA ESLWCSVHGK IRKTACTTWF NMLLLRSLLK RLN
0001: MNEVNKQKEN RDGHETLVNE EGSAARTRPT SVEEIRLRRK RKESLENVKE ETVGAAQLLG YDLVEKASDY HESKNLRREE HVEDSSRKEK EAISRCREEK
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G33435]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.