Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU93274 | Sorghum | nucleus | 88.11 | 88.75 |
| Os03t0138100-01 | Rice | nucleus | 30.84 | 46.81 |
| CDX84685 | Canola | nucleus | 13.01 | 34.14 |
| KRH69095 | Soybean | nucleus | 8.71 | 28.52 |
| GSMUA_Achr11P... | Banana | nucleus | 13.83 | 28.42 |
| VIT_05s0049g01490.t01 | Wine grape | nucleus | 27.87 | 27.73 |
| KRH31685 | Soybean | nucleus | 25.0 | 24.77 |
| Solyc09g090420.2.1 | Tomato | nucleus | 27.05 | 23.89 |
| CDX79530 | Canola | nucleus | 25.72 | 20.85 |
| Zm00001d048655_P012 | Maize | extracellular, nucleus | 11.48 | 20.78 |
| Bra022941.1-P | Field mustard | nucleus | 26.43 | 20.46 |
| AT2G33435.1 | Thale cress | nucleus | 24.59 | 18.11 |
| Zm00001d048777_P007 | Maize | nucleus | 10.55 | 17.22 |
| Zm00001d007632_P003 | Maize | nucleus | 10.96 | 17.01 |
| Zm00001d007635_P004 | Maize | nucleus | 6.97 | 9.66 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6PJM8 | ProteinID:AQL09504.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF56 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000842A9FA | EnsemblPlantsGene:Zm00001d048364 | EnsemblPlants:Zm00001d048364_P002 | EnsemblPlants:Zm00001d048364_T002 |
| SEG:seg | : | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr9:-:155131227..155139010
Molecular Weight (calculated)
108924.0 Da
IEP (calculated)
8.237
GRAVY (calculated)
-0.923
Length
976 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRKIYGEND SERIASDGTA ARTRPLSIKD IMLRREKKAA SESKKAKEGL ENGKDKSTHL ERGRDHKSRK DPRDMPVEGS RKEKNRDATR EGAKKEKPRH
101: IPREYSRKED MRYAPKEVPK DNSRDRSNTD AKMDDLKDAP NVPEKESLRD APRKASKKRR PSGDDNHSGS KDKGIHHSQK LSTSMSGRAD ESKTRTLSEI
201: RERKGDVMRS EYQKEPGKRW NDEINDDDKL KFKSEKLRNE TKRKDRSFDN ERSLEVGPVL KRHDSARFQD SKHSDRNAGR NEYATPYHGE SELKRRRSRS
301: RDHDRERYSR SISPPLREQR YNYRGRDFGN PPYYSMEKSR GKYAEVDKQR SSGSGGYIGG LHQRYESRLG GYSPRKKKTS LQAEQATTKT PSKVIQSPEK
401: KSATWDQPPV KANQSNFPTT FLPTVGQMAP TPFSFSVIKD PSTTAVTMLA GNSLTADSVQ LTQATRPLRR LHIENLPDSA TEDKLIDCLN DFLLSTGSKL
501: QRSKPCLSCT INREKRQAFV EFLTPEDATA AISFDGRSLN GSVLRIRRPK EYVETVNVTP KKAEETALIS DVVADSPYKI FIAGIAGVIS SKMLMEIVSA
601: FGPLAAYRFL FNNELGGPCA FLEYADRSVT SKACAGLNGM MLGGRVLTAV HVFPNPHVEA ANEASPFYGI PDNAKLLLKE PTKVLQLKNV FEREEYMLLS
701: KSELEETLED VRVECTSMDK IHRFGAVKSV NVVEYPAAGV SAAEENIVEL KIECTEFSDT ENIAKAVSEY SVPIIPSIDV LNHSVASDTK DVDLIPESQD
801: QKDKHLPSNA ALCESEAPVA DEDAELDETQ SRAALPTPQH AEADHTEAAV DENKHTGAGK VTATATDDDA VEKSHGDPRT SETCNPAGPT DKAEKPGRYS
901: EQGAGDVTED RPEKEAQAVG TSDTGFVFEP GSVLVEFLRE EAACMAAHSL HGRRFGNRTV HAGYAPYDLY LQKYPR
101: IPREYSRKED MRYAPKEVPK DNSRDRSNTD AKMDDLKDAP NVPEKESLRD APRKASKKRR PSGDDNHSGS KDKGIHHSQK LSTSMSGRAD ESKTRTLSEI
201: RERKGDVMRS EYQKEPGKRW NDEINDDDKL KFKSEKLRNE TKRKDRSFDN ERSLEVGPVL KRHDSARFQD SKHSDRNAGR NEYATPYHGE SELKRRRSRS
301: RDHDRERYSR SISPPLREQR YNYRGRDFGN PPYYSMEKSR GKYAEVDKQR SSGSGGYIGG LHQRYESRLG GYSPRKKKTS LQAEQATTKT PSKVIQSPEK
401: KSATWDQPPV KANQSNFPTT FLPTVGQMAP TPFSFSVIKD PSTTAVTMLA GNSLTADSVQ LTQATRPLRR LHIENLPDSA TEDKLIDCLN DFLLSTGSKL
501: QRSKPCLSCT INREKRQAFV EFLTPEDATA AISFDGRSLN GSVLRIRRPK EYVETVNVTP KKAEETALIS DVVADSPYKI FIAGIAGVIS SKMLMEIVSA
601: FGPLAAYRFL FNNELGGPCA FLEYADRSVT SKACAGLNGM MLGGRVLTAV HVFPNPHVEA ANEASPFYGI PDNAKLLLKE PTKVLQLKNV FEREEYMLLS
701: KSELEETLED VRVECTSMDK IHRFGAVKSV NVVEYPAAGV SAAEENIVEL KIECTEFSDT ENIAKAVSEY SVPIIPSIDV LNHSVASDTK DVDLIPESQD
801: QKDKHLPSNA ALCESEAPVA DEDAELDETQ SRAALPTPQH AEADHTEAAV DENKHTGAGK VTATATDDDA VEKSHGDPRT SETCNPAGPT DKAEKPGRYS
901: EQGAGDVTED RPEKEAQAVG TSDTGFVFEP GSVLVEFLRE EAACMAAHSL HGRRFGNRTV HAGYAPYDLY LQKYPR
0001: MNEVNKQKEN RDGHETLVNE EGSAARTRPT SVEEIRLRRK RKESLENVKE ETVGAAQLLG YDLVEKASDY HESKNLRREE HVEDSSRKEK EAISRCREEK
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G33435]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.