Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG28995 | Sorghum | nucleus | 80.1 | 79.83 |
| HORVU5Hr1G090000.2 | Barley | nucleus | 51.51 | 77.58 |
| Zm00001d048655_P012 | Maize | extracellular, nucleus | 68.06 | 75.51 |
| Zm00001d007632_P003 | Maize | nucleus | 79.26 | 75.36 |
| TraesCS4D01G150000.4 | Wheat | nucleus | 70.4 | 73.47 |
| GSMUA_Achr4P16510_001 | Banana | nucleus | 57.86 | 73.31 |
| TraesCS4B01G145600.4 | Wheat | nucleus | 69.57 | 73.11 |
| Os11t0636900-02 | Rice | nucleus | 69.9 | 72.82 |
| TraesCS4A01G165000.4 | Wheat | nucleus | 70.23 | 71.79 |
| HORVU4Hr1G038850.14 | Barley | nucleus | 68.73 | 67.93 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 62.21 | 64.58 |
| HORVU5Hr1G089980.2 | Barley | nucleus, plastid | 58.19 | 61.16 |
| TraesCS5A01G366000.1 | Wheat | nucleus | 61.04 | 60.23 |
| TraesCS5D01G375600.1 | Wheat | nucleus | 61.54 | 60.23 |
| TraesCS5B01G368400.1 | Wheat | nucleus | 58.7 | 55.71 |
| TraesCS2A01G122400.1 | Wheat | nucleus | 12.21 | 44.79 |
| TraesCS5B01G041900.1 | Wheat | nucleus | 12.37 | 44.58 |
| TraesCS2B01G144600.1 | Wheat | nucleus | 12.04 | 44.17 |
| TraesCS5A01G040700.1 | Wheat | cytosol | 11.87 | 42.77 |
| TraesCS5D01G071700.1 | Wheat | nucleus | 10.2 | 35.47 |
| TraesCS5D01G071600.1 | Wheat | nucleus | 10.2 | 32.62 |
| TraesCS5B01G067400.1 | Wheat | nucleus | 10.03 | 32.09 |
| Zm00001d007635_P004 | Maize | nucleus | 30.27 | 25.71 |
| Zm00001d048364_P002 | Maize | nucleus | 17.22 | 10.55 |
Protein Annotations
| EntrezGene:100286059 | MapMan:16.4.1.2.11.2 | Gene3D:3.30.70.330 | UniProt:A0A1D6PPZ8 | ProteinID:AQK48863.1 | ProteinID:AQK48866.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR23139 | PANTHER:PTHR23139:SF80 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGRFAMs:TIGR01642 | InterPro:U2AF_lg | UniParc:UPI000844866E | EnsemblPlantsGene:Zm00001d048777 | EnsemblPlants:Zm00001d048777_P007 | EnsemblPlants:Zm00001d048777_T007 |
| SEG:seg | : | : | : | : | : |
Description
Splicing factor U2af large subunit A
Coordinates
chr4:+:5407559..5413841
Molecular Weight (calculated)
66243.0 Da
IEP (calculated)
8.869
GRAVY (calculated)
-0.946
Length
598 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEYDERYQG NGDMPAAEGG YPQAEYAAAA APAAGGSPPA DSKPSGFSDH ADGRSSQHQI SIQHETQSHD SGSSKSRERD RERDKGKDRE RDRDRGREKG
101: RDRDRDKDRE RSDRDRDRHH RDHRERSEKR EHRDRSDDRD RHRDGRDRHR DDRDSERRRD RDRDGHRRHR SRSPSKSRDR DRRSRSRSRS RSKSKRVSGF
201: DQAPPQHALP IVAAGAIPGQ LPGITAPIPG VGVLPNLYNL AAGQFNPLVI QPQAMTQQAT RHARRVYVGG LPPTANEQTV AIFFNGVMAA IGGNTAGPGD
301: AVLNVYINHD KKFAFVEMRS VEEASNAMAL DGIMFEGAPV KVRRPTDYNP SLAAALGPSQ PNPNLNLAAV GLTPGSAGGL EGPDRIFVGG LPYYFTEAQV
401: RELLESFGPL RGFDLVKDRE TGNSKGYAFC VYQDLNVTDI ACAALNGIKM GDKTLTVRRA NQGASQPRPE QESILLQAQQ QVQMQKLVYQ VGGALPTKVV
501: CLTQVVTADE LRDDEEYNDI VEDMREEGRK YGNLVKVVIP RPDPSDAPVA GVGKVFLEYA DVEGSTKAKT GMHGRKFGGN QVVAVFYPED KFAAEQYD
101: RDRDRDKDRE RSDRDRDRHH RDHRERSEKR EHRDRSDDRD RHRDGRDRHR DDRDSERRRD RDRDGHRRHR SRSPSKSRDR DRRSRSRSRS RSKSKRVSGF
201: DQAPPQHALP IVAAGAIPGQ LPGITAPIPG VGVLPNLYNL AAGQFNPLVI QPQAMTQQAT RHARRVYVGG LPPTANEQTV AIFFNGVMAA IGGNTAGPGD
301: AVLNVYINHD KKFAFVEMRS VEEASNAMAL DGIMFEGAPV KVRRPTDYNP SLAAALGPSQ PNPNLNLAAV GLTPGSAGGL EGPDRIFVGG LPYYFTEAQV
401: RELLESFGPL RGFDLVKDRE TGNSKGYAFC VYQDLNVTDI ACAALNGIKM GDKTLTVRRA NQGASQPRPE QESILLQAQQ QVQMQKLVYQ VGGALPTKVV
501: CLTQVVTADE LRDDEEYNDI VEDMREEGRK YGNLVKVVIP RPDPSDAPVA GVGKVFLEYA DVEGSTKAKT GMHGRKFGGN QVVAVFYPED KFAAEQYD
001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA
Arabidopsis Description
U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.