Factsheet for HORVU5Hr1G089980.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G030660.5
HORVU1Hr1G046870.5
HORVU1Hr1G067160.1
HORVU2Hr1G064920.1
HORVU5Hr1G080210.1
HORVU5Hr1G117990.1
HORVU7Hr1G097780.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	HORVU1Hr1G067160.1	AT1G28360.1	21798944
AT4G36690.1	HORVU2Hr1G064920.1	AT2G39760.1	21798944
AT4G36690.1	HORVU1Hr1G030660.5	AT3G50670.1	21798944
AT4G36690.1	HORVU1Hr1G046870.5	AT3G50670.1	21798944
AT4G36690.1	HORVU7Hr1G097780.1	AT5G49400.1	21798944
AT4G36690.1	HORVU5Hr1G080210.1	AT5G51910.1	21798944
AT4G36690.1	HORVU5Hr1G117990.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G090000.2	Barley	nucleus	69.42	99.5
CDY67096	Canola	mitochondrion	32.34	74.49
PGSC0003DMT400040069	Potato	cytosol	40.07	73.31
CDY12868	Canola	mitochondrion	29.35	73.25
TraesCS5D01G375600.1	Wheat	nucleus	76.1	70.87
CDX75589	Canola	mitochondrion	42.88	68.73
TraesCS5A01G366000.1	Wheat	nucleus	72.23	67.82
AT1G60830.2	Thale cress	nucleus	12.65	64.86
Bra040973.1-P	Field mustard	nucleus	30.58	63.97
GSMUA_Achr4P16510_001	Banana	nucleus	52.9	63.77
HORVU4Hr1G029030.3	Barley	nucleus	60.28	62.36
CDY55407	Canola	nucleus	11.95	60.71
TraesCS5B01G368400.1	Wheat	nucleus	67.14	60.63
VIT_13s0139g00410.t01	Wine grape	cytosol	7.03	58.82
CDY40481	Canola	nucleus	52.9	58.33
Zm00001d048777_P007	Maize	nucleus	61.16	58.19
HORVU4Hr1G038850.14	Barley	nucleus	61.34	57.69
KXG28995	Sorghum	nucleus	60.63	57.5
CDY12869	Canola	nucleus	50.09	57.46
Bra027119.1-P	Field mustard	nucleus	49.56	57.43
CDY35472	Canola	nucleus	55.36	57.27
VIT_04s0023g01450.t01	Wine grape	nucleus	56.59	56.99
CDY24773	Canola	nucleus	55.36	56.86
Bra010569.1-P	Field mustard	nucleus	55.36	56.86
PGSC0003DMT400033041	Potato	nucleus	54.83	56.12
GSMUA_Achr4P11020_001	Banana	nucleus	56.77	56.08
CDY40492	Canola	nucleus	14.76	56.0
Solyc02g085570.2.1	Tomato	nucleus	54.83	55.91
AT4G36690.1	Thale cress	nucleus	55.71	55.32
Bra031477.1-P	Field mustard	nucleus	57.47	55.05
CDY46188	Canola	nucleus	57.47	55.05
CDY03767	Canola	nucleus	58.17	54.53
Solyc02g062920.2.1	Tomato	nucleus	53.6	54.46
AT1G60900.1	Thale cress	nucleus	56.24	54.33
Zm00001d007632_P003	Maize	nucleus	59.75	54.05
KRH64800	Soybean	nucleus	56.94	54.0
KRH56450	Soybean	nucleus	57.29	53.88
Bra040940.1-P	Field mustard	nucleus	51.49	52.14
PGSC0003DMT400000919	Potato	nucleus	55.18	51.9
Solyc12g008750.1.1	Tomato	nucleus	55.36	51.89
CDY40493	Canola	nucleus	25.48	51.6
CDY66742	Canola	nucleus	51.32	51.5
CDY30313	Canola	nucleus	52.37	50.68
CDY55589	Canola	mitochondrion	21.27	48.21
Bra010656.1-P	Field mustard	mitochondrion, plastid	20.91	47.04
Bra031341.1-P	Field mustard	nucleus	20.74	47.01
VIT_13s0139g00390.t01	Wine grape	plasma membrane	8.96	32.69

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	EnsemblPlantsGene:HORVU5Hr1G089980	EnsemblPlants:HORVU5Hr1G089980.2
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139
PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642
InterPro:U2AF_lg	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:585788400..585793505

Molecular Weight (calculated)

63401.9 Da

IEP (calculated)

7.499

GRAVY (calculated)

-0.951

Length

569 amino acids

Sequence
(BLAST)

001: XSRTTRPEAA SAAAADRKPT RRTPPHPMAE HDAPPEVSAG AARSPPSNKR VGDARSPQQD VQPHKERSSS SRDRGRERDE DKDRERHRRR GDDRERYRDR
101: ESARERGEGS RDRERHHREH RENRSERREH RDRFDDRDYR RSRDRDAERR DRDRDGHRRH RSRSRSESQS KRMSGFDQGP SEAIHRPAPA ATPGQLPELP
201: AANPGMFPNM LPNMFNLPGL GQPLAMTQQA TRHARRVYVG GLPPIANEQT VALFFNQVMA AIGGNTSGLG DAVVNVYINH DKKFAFVEMR SVEEASNAMA
301: LDGIMFEGAP VKVRRPTDYN PSQAATLGPS QPSPNLNLAA VGLTPGAGGG LEGPDRIFVG GLPYYFTEAQ VRELLETFGP LRGFDIVKDK ETGNSKGYAF
401: CLYQDVTVTD IACAALNGIQ LGDRTLTVRR ANQGAEPRPE QENILLQAQQ EAQMKRLVYE VGGALPTKVV CLTDVVSADD LRDDEEYNDI LEDMTLEARK
501: YGNLVQAVIP RPHPSGDPVA GAGKVFLEYA DLESSSRARM GMHGRKFDGK ETVAVFYPED KFGEGDYDY

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.