Factsheet for VIT_04s0023g01450.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040069	Potato	cytosol	47.61	86.5
GSMUA_Achr4P16510_001	Banana	nucleus	64.96	77.75
Solyc02g085570.2.1	Tomato	nucleus	74.69	75.63
Solyc02g062920.2.1	Tomato	nucleus	74.16	74.82
PGSC0003DMT400033041	Potato	nucleus	72.92	74.1
GSMUA_Achr4P11020_001	Banana	nucleus	73.1	71.7
HORVU5Hr1G090000.2	Barley	nucleus	50.27	71.54
KRH64800	Soybean	nucleus	73.63	69.33
KRH56450	Soybean	nucleus	73.81	68.93
EES08974	Sorghum	nucleus	65.49	67.89
TraesCS4D01G143400.3	Wheat	nucleus	65.49	67.4
HORVU4Hr1G029030.3	Barley	nucleus	65.31	67.09
VIT_13s0139g00410.t01	Wine grape	cytosol	7.79	64.71
TraesCS4D01G150000.4	Wheat	nucleus	65.13	64.22
KXG28995	Sorghum	nucleus	67.61	63.67
TraesCSU01G068100.3	Wheat	nucleus	65.13	63.45
TraesCS4B01G145600.4	Wheat	nucleus	63.89	63.44
Os11t0636900-02	Rice	nucleus	64.42	63.41
TraesCS4A01G171800.3	Wheat	nucleus	64.78	62.99
PGSC0003DMT400000919	Potato	nucleus	67.08	62.64
TraesCS4A01G165000.4	Wheat	nucleus	64.78	62.56
Solyc12g008750.1.1	Tomato	nucleus	66.37	61.78
HORVU4Hr1G038850.14	Barley	nucleus	63.19	59.01
HORVU5Hr1G089980.2	Barley	nucleus, plastid	56.99	56.59
TraesCS5D01G375600.1	Wheat	nucleus	58.76	54.34
TraesCS5A01G366000.1	Wheat	nucleus	58.05	54.13
VIT_00s0561g00030.t01	Wine grape	cytosol, nucleus, plasma membrane	47.96	53.98
TraesCS5B01G368400.1	Wheat	nucleus	56.11	50.32
KXG29128	Sorghum	nucleus	49.2	43.92
TraesCS2A01G122400.1	Wheat	nucleus	12.39	42.94
TraesCS2B01G144600.1	Wheat	nucleus	12.21	42.33
TraesCS5A01G040700.1	Wheat	cytosol	11.86	40.36
TraesCS5B01G041900.1	Wheat	nucleus	11.86	40.36
VIT_13s0139g00390.t01	Wine grape	plasma membrane	10.44	37.82
TraesCS5D01G071700.1	Wheat	nucleus	9.38	30.81
TraesCS5D01G071600.1	Wheat	nucleus	9.38	28.34
TraesCS5B01G067400.1	Wheat	nucleus	9.2	27.81
Zm00001d007635_P004	Maize	nucleus	28.5	22.87
VIT_05s0049g01490.t01	Wine grape	nucleus	18.58	10.7
VIT_00s0611g00010.t01	Wine grape	nucleus	27.61	2.42

Protein Annotations

EntrezGene:100241076	wikigene:100241076	MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	EMBL:AM471698	ProteinID:CAN68321
ProteinID:CAN68321.1	ProteinID:CCB44468	ProteinID:CCB44468.1	UniProt:F6GWY2	EMBL:FN594959	GO:GO:0000243
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0008187	GO:GO:0008380	GO:GO:0009987	GO:GO:0016607	GO:GO:0030628
GO:GO:0071004	GO:GO:0089701	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100241076	wikigene:LOC100241076
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGR:TC54236	TIGR:TC56102	TIGRFAMs:TIGR01642
InterPro:U2AF_lg	UniParc:UPI0001983175	ArrayExpress:VIT_04s0023g01450	EnsemblPlantsGene:VIT_04s0023g01450	EnsemblPlants:VIT_04s0023g01450.t01	unigene:Vvi.8204
RefSeq:XP_002271463	RefSeq:XP_002271463.2	RefSeq:XP_010649165.1	SEG:seg	:	:

Description

U2 snRNP auxiliary factor large subunit [Source:UniProtKB/TrEMBL;Acc:F6GWY2]

Coordinates

chr4:+:18001267..18008718

Molecular Weight (calculated)

62781.9 Da

IEP (calculated)

8.046

GRAVY (calculated)

-0.931

Length

565 amino acids

Sequence
(BLAST)

001: MPDYEGRYEG NGNGEDLDNY GSSPQPRGSS HGGPDDYSDS KSQHGSREYQ RESSKSRERE REKGRDKDRE RDRDRERDKE RDRDRDRDKE RDRDRRDRYR
101: DRSDRRERTR DRDDDDFHRS RDYDRRRDFD RDRDDRHKRR SRSRSKGRSE QRSRSRSASL SKSKRVSGFD MAPPASAMLA GAAAAAGQIP GTTPTIPGMF
201: PNMFPLASGQ FGALPVMPVQ AMTQQATRHA RRVYVGGLSP TANEQSVATF FSQVMSAIGG NTAGPGDAVV NVYINHEKKF AFVEMRSVEE ASNAMALDGI
301: IFEGAPVKVR RPSDYNPSLA ATLGPSQPNP NLNLAAVGLT PGSAGGLEGP DRIFVGGLPY YFTEAQIREL LESFGPLRGF DLVKDRETGN SKGYAFCVYQ
401: DLSVTDIACA ALNGIKMGDK TLTVRRANQG ASQPKPEQEN VLLHAQQQIA LQRLMFQPGA LATKVVCLTQ VVNADELQDD EAYEDIVEDM RIEGGKFGNL
501: VNVAIPRPKP NGEPTPGLGK VFLEYADIDG ATKARTGLNG RKFDGNQVVA VFYPENKFSQ GEYDG

Best Arabidopsis Sequence Match ( AT4G36690.1 )
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA

Arabidopsis Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.